Merge branch 'release-0.9.8'

.gitignore

+__pycache__
+build
+*.pyc
+*.swp

.mailmap

+Luke Campagnola <lcampagn@email.unc.edu> Luke Campagnola <>
+Luke Campagnola <lcampagn@email.unc.edu> Luke Campagnola <luke.campagnola@gmail.com>
+Megan Kratz <meganbkratz@gmail.com> meganbkratz@gmail.com <>
+Megan Kratz <meganbkratz@gmail.com> Megan Kratz <megankratz@megancomputer.local>
+Megan Kratz <meganbkratz@gmail.com> Megan Kratz <megankratz@wireless152023024102.med.unc.edu>
+Megan Kratz <meganbkratz@gmail.com> Megan Kratz <megankratz@wireless152023025209.med.unc.edu>
+Megan Kratz <meganbkratz@gmail.com> Megan Kratz <megankratz@p152023031037.med.unc.edu>
+Megan Kratz <meganbkratz@gmail.com> Megan Kratz <megankratz@wire152019114033.med.unc.edu>
+Megan Kratz <meganbkratz@gmail.com> Megan Kratz <megankratz@wireless152023024078.med.unc.edu>
+Ingo Breßler <dev@ingobressler.net> Ingo Breßler <ingo.bressler@bam.de>
+Ingo Breßler <dev@ingobressler.net> Ingo B. <dev@ingobressler.net>
+

CHANGELOG

+pyqtgraph-0.9.8  2013-11-24
+
+  API / behavior changes:
+    - ViewBox will auto-range when ImageItem changes shape
+    - AxisItem: 
+        - Smarter about deciding which ticks get text
+        - AxisItem.setScale(float) has the usual behavior, but .setScale(None) 
+          is deprecated. Instead use:
+          AxisItem.enableAutoSIPrefix(bool) to enable/disable SI prefix scaling
+    - Removed inf/nan checking from PlotDataItem and PlotCurveItem; improved 
+      performance
+
+  New Features:
+    - Support for dynamic downsampling and view clipping in PlotDataItem and 
+      PlotItem
+    - Added 'connect' option to PlotDataItem and PlotCurveItem to affect which 
+      line segments are drawn
+    - Support for FFT with non-uniform time sampling
+    - Added BarGraphItem
+    - OpenGL:
+        - Added export methods to GLViewWidget
+        - Wireframe meshes
+        - GLLinePLotItem gets antialiasing, accepts array of colors
+        - GLMeshItem accepts ShaderProgram or name of predefined program
+        - Added GLBarGraphItem
+    - LegendItem:
+        - User-draggable
+        - Allow custom ItemSamples
+        - Symbol support
+        - Support for removing items
+    - ScatterPlotWidget, ColorMapWidget, and DataFilterWidget are stable
+    - TableWidget:
+        - Made numerically sortable
+        - Added setEditable method
+    - AxisItem ability to truncate axis lines at the last tick
+    - arrayToQPath() added 'finite' connection mode which omits non-finite 
+      values from connections
+    - pg.plot() and pg.PlotWidget() now accept background argument
+    - Allow QtProcess without local QApplication
+    - Support for dashing in mkPen()
+    - Added Dock.close()
+    - Added style options to flowchart connection lines
+    - Added parentChanged and viewChanged hooks to GraphicsItem 
+    - Bidirectional pseudoScatter for beeswarm plots
+    - Added exit() function for working around PyQt exit crashes
+    - Added PolylineROI.getArrayRegion()
+
+  Bugfixes:
+    - Many Python 3 compatibility fixes
+    - AxisItem:
+        - Correctly handles scaling with values that are not power of 10
+        - Did not update grid line length when plot stretches
+        - Fixed unicode handling in AxisItem label
+    - ViewBox:
+        - Overhauled to fix issues with aspect locking
+        - ViewBox context menu elements are no longer deleted when using 
+          flowchart with pyside
+        - Fixed view linking with inverted y axis
+        - Prevent auto-range disabling when dragging with one mouse axis diabled
+        - Ignore inf and nan when auto-ranging
+    - ParameterTree:
+        - fixed TextParameter editor disappearing after focus lost
+        - ListParameter: allow unhashable types as parameter values.
+    - Exporting:
+        - ImageExporter correctly handles QBrush with style=NoBrush
+        - SVGExporter text, gradients working correctly
+        - SVGExporter correctly handles coordinate corrections for groups with 
+          mixed elements
+    - ImageView:
+        - Fixed auto-levelling when normalization options change
+        - Added autoHistogramRange argument to setImage
+    - ScatterPlotItem:
+        - Fixed crashes caused by ScatterPlotItem
+        - Fixed antialiasing
+    - arrayToQPath performance improved for python 3
+    - Fixed makeQImage on many platforms (notably, on newer PyQt APIs)
+    - Removed unnecessary scipy imports for faster import
+    - GraphItem reports pixel margins to improve auto-range
+    - Add backport ordereddict to repository; old OrderedDict class is removed
+    - Corrected behavior of GraphicsView.setBackground
+    - Fixed PySide bug listing image formats
+    - Fixed QString -> str conversions in flowchart
+    - Unicode file name support when exporting
+    - Fixed MatplotlibWidget + PySide
+    - Fixed 3D view updating after every scene change
+    - Fixed handling of non-native dtypes when optimizing with weave
+    - RemoteGraphicsView fixed for PyQt 4.10, Python 3
+    - Fixed GLLinePlotItem line width option
+    - HistogramLUTWidget obeys default background color
+    - ScaleBar complete rewrite
+    - GraphItem obeys antialiasing flag
+    - Workaround for PySide/QByteArray memory leak
+    - Fixed example --test on windows, python3
+    - Luke finished dissertation
+
+
+pyqtgraph-0.9.7  2013-02-25
+
+   Bugfixes:
+     - ArrowItem auto range now works correctly
+     - Dock drag/drop fixed on PySide
+     - Made padding behavior consistent across ViewBox methods
+     - Fixed MeshData / python2.6 incompatibility
+     - Fixed ScatterPlotItem.setSize and .setPointData
+     - Workaround for PySide bug; GradientEditor fixed
+     - Prefer initially selecting PlotItem rather then ViewBox when exporting
+     - Fixed python3 import error with flowcharts
+   
+   Cleaned up examples, made code editable from example loader
+   Minor documentation updates
+   Features:
+     - Added GraphItem class for displaying networks/trees
+     - Added ColorMap class for mapping linear gradients and generating lookup
+     tables
+       (Provides gradient editor functionality without the GUI)
+     - Added ColorMapWidget for complex user-defined color mapping
+     - Added ScatterPlotWidget for exploring relationships in multi-column
+     tables
+     - Added ErrorBarItem
+     - SVG and image exporters can now copy to clipboard
+     - PlotItem gets new methods: addLine, setLabels, and listDataItems
+     - AxisItem gets setTickFont method
+     - Added functions.arrayToQPath, shared between GraphItem and PlotCurveItem
+     - Added gradient editors to parametertree
+     - Expanded documentation, added beginning of Qt crash course
+   
+   Bugfixes:
+     - Fixed auto-ranging bugs: ViewBox now properly handles pixel-padding
+     around data items
+     - ViewBox ignores bounds of zoom-rect when auto ranging
+     - Fixed AxisItem artifacts
+     - Fixed GraphicsItem.pixelVector caching bugs and simplified workaround for
+     fp-precision errors
+     - LinearRegionItem.hoverEvent obeys 'movable' flag                         
+                                                                                
+                                        
+     - Fixed PlotDataItem nan masking bugs                                      
+                                                                                
+                                        
+     - Workaround for segmentation fault in QPainter.drawPixmapFragments        
+                                                                                
+                                        
+     - multiprocess and RemoteGraphicsView work correctly in Windows.           
+                                                                                
+                                        
+     - Expanded python 3 support                                                
+                                                                                
+                                        
+     - Silenced weave errors by default                                         
+                                                                                
+                                        
+     - Fixed " 'win' in sys.platform " occurrences matching 'darwin' (duh)
+     - Workaround for change in QImage API (PyQt 4.9.6)
+     - Fixed axis ordering bug in GLScatterPlotItem
+
+pyqtgraph-0.9.6  2013-02-14
+
+   Features:
+     - Added GraphItem class for displaying networks/trees
+     - Added ColorMap class for mapping linear gradients and generating lookup
+     tables
+       (Provides gradient editor functionality without the GUI)
+     - Added ColorMapWidget for complex user-defined color mapping
+     - Added ScatterPlotWidget for exploring relationships in multi-column
+     tables
+     - Added ErrorBarItem
+     - SVG and image exporters can now copy to clipboard
+     - PlotItem gets new methods: addLine, setLabels, and listDataItems
+     - AxisItem gets setTickFont method
+     - Added functions.arrayToQPath, shared between GraphItem and PlotCurveItem
+     - Added gradient editors to parametertree
+     - Expanded documentation, added beginning of Qt crash course
+   
+   Bugfixes:
+     - Fixed auto-ranging bugs: ViewBox now properly handles pixel-padding
+     around data items
+     - ViewBox ignores bounds of zoom-rect when auto ranging
+     - Fixed AxisItem artifacts
+     - Fixed GraphicsItem.pixelVector caching bugs and simplified workaround for
+     fp-precision errors
+     - LinearRegionItem.hoverEvent obeys 'movable' flag                         
+                                                                                
+                                        
+     - Fixed PlotDataItem nan masking bugs                                      
+                                                                                
+                                        
+     - Workaround for segmentation fault in QPainter.drawPixmapFragments        
+                                                                                
+                                        
+     - multiprocess and RemoteGraphicsView work correctly in Windows.           
+                                                                                
+                                        
+     - Expanded python 3 support                                                
+                                                                                
+                                        
+     - Silenced weave errors by default                                         
+                                                                                
+                                        
+     - Fixed " 'win' in sys.platform " occurrences matching 'darwin' (duh)
+     - Workaround for change in QImage API (PyQt 4.9.6)
+     - Fixed axis ordering bug in GLScatterPlotItem
+   Plotting performance improvements:
+     - AxisItem shows fewer tick levels in some cases.
+     - Lots of boundingRect and dataBounds caching
+       (improves ViewBox auto-range performance, especially with multiple plots)
+     - GraphicsScene avoids testing for hover intersections with non-hoverable
+     items
+       (much less slowdown when moving mouse over plots)
+   
+   Improved performance for remote plotting:
+     - reduced cost of transferring arrays between processes (pickle is too
+     slow)
+     - avoid unnecessary synchronous calls
+   
+   Added RemoteSpeedTest example
+
+
+pyqtgraph-0.9.5  2013-01-11
+
+   Plotting performance improvements:
+     - AxisItem shows fewer tick levels in some cases.
+     - Lots of boundingRect and dataBounds caching
+       (improves ViewBox auto-range performance, especially with multiple plots)
+     - GraphicsScene avoids testing for hover intersections with non-hoverable
+     items
+       (much less slowdown when moving mouse over plots)
+   
+   Improved performance for remote plotting:
+     - reduced cost of transferring arrays between processes (pickle is too
+     slow)
+     - avoid unnecessary synchronous calls
+   
+   Added RemoteSpeedTest example
+   Documentation:
+   - Added documentation on export system
+   - Added flowchart documentation and custom node example
+   
+   Bugfixes: 
+   - prevent PlotCurveItem drawing shadow when unnecessary
+   - deprecated flowchart.Node.__getattr__ -- causes too many problems.
+
+pyqtgraph-0.9.4  2013-01-07
+
+   Documentation:
+   - Added documentation on export system
+   - Added flowchart documentation and custom node example
+   
+   Bugfixes: 
+   - prevent PlotCurveItem drawing shadow when unnecessary
+   - deprecated flowchart.Node.__getattr__ -- causes too many problems.
+   Bugfix: prevent adding invalid entry to sys.path when running examples
+
+pyqtgraph-0.9.3  2012-12-29
+
+   Bugfix: prevent adding invalid entry to sys.path when running examples
+   Bugfixes:
+   - SVG export text elements use generic font-family as backup, corrected item
+   transformation issues
+   - Fixed RuntimeError caused when clearing item hierarchies from ViewBox
+   - Fixed example execution bug
+   
+   Packaging maintenance:
+   - Added missing files to MANIFEST.in, fixed setup.py package detection
+   - Added debian control files for building source packages
+   - Fixed version numbering in doc, __init__.py
+
+pyqtgraph-0.9.2  2012-12-29
+
+   Bugfixes:
+   - SVG export text elements use generic font-family as backup, corrected item
+   transformation issues
+   - Fixed RuntimeError caused when clearing item hierarchies from ViewBox
+   - Fixed example execution bug
+   
+   Packaging maintenance:
+   - Added missing files to MANIFEST.in, fixed setup.py package detection
+   - Added debian control files for building source packages
+   - Fixed version numbering in doc, __init__.py
+
+pyqtgraph-0.9.1  2012-12-27
+
+   Removed incorrect version numbers
+   Correction to setup.py - use install_requires to inform pip of dependencies.
+   Fixed doc version (again)
+   Added debian control files
+   bugfixes for new package structure
+
+pyqtgraph-0.9.0  2012-12-27
+
+  * Initial release.

README.md

+PyQtGraph
+=========
+
+A pure-Python graphics library for PyQt/PySide
+
+Copyright 2012 Luke Campagnola, University of North Carolina at Chapel Hill
+
+<http://www.pyqtgraph.org>
+
+Maintainer
+----------
+
+  * Luke Campagnola   ('luke.campagnola@%s.com' % 'gmail')
+
+Contributors
+------------
+
+  * Megan Kratz
+  * Paul Manis
+  * Ingo Breßler
+  * Christian Gavin
+  * Michael Cristopher Hogg
+  * Ulrich Leutner
+  * Felix Schill
+  * Guillaume Poulin
+
+Requirements
+------------
+
+  * PyQt 4.7+ or PySide
+  * python 2.6, 2.7, or 3.x
+  * numpy, scipy
+  * For 3D graphics: pyopengl
+  * Known to run on Windows, Linux, and Mac.
+
+Support
+-------
+
+  Post at the [mailing list / forum](https://groups.google.com/forum/?fromgroups#!forum/pyqtgraph)
+
+Installation Methods
+--------------------
+
+  * To use with a specific project, simply copy the pyqtgraph subdirectory
+      anywhere that is importable from your project
+  * To install system-wide from source distribution:
+        `$ python setup.py install`
+  * For instalation packages, see the website (pyqtgraph.org)
+
+Documentation
+-------------
+
+There are many examples; run `python -m pyqtgraph.examples` for a menu.
+
+Some (incomplete) documentation exists at this time.
+  * Easiest place to get documentation is at <http://www.pyqtgraph.org/documentation>
+  * If you acquired this code as a .tar.gz file from the website, then you can also look in
+      doc/html.
+  * If you acquired this code via GitHub, then you can build the documentation using sphinx.
+      From the documentation directory, run:
+          `$ make html`
+  
+Please feel free to pester Luke or post to the forum if you need a specific
+  section of documentation.

README.txt

-PyQtGraph - A pure-Python graphics library for PyQt/PySide
-Copyright 2012 Luke Campagnola, University of North Carolina at Chapel Hill
-http://www.pyqtgraph.org
-
-Authors:
-    Luke Campagnola   ('luke.campagnola@%s.com' % 'gmail')
-    Megan Kratz
-    Ingo Breßler
-
-Requirements:
-    PyQt 4.7+ or PySide
-    python 2.6, 2.7, or 3.x
-    numpy, scipy
-    For 3D graphics: pyopengl
-    Known to run on Windows, Linux, and Mac.
-
-Support:
-    Post at the mailing list / forum:
-    https://groups.google.com/forum/?fromgroups#!forum/pyqtgraph
-
-Installation Methods:
-    - To use with a specific project, simply copy the pyqtgraph subdirectory 
-      anywhere that is importable from your project 
-    - To install system-wide from source distribution:
-         $ python setup.py install
-    - For instalation packages, see the website (pyqtgraph.org)    
-
-Documentation:
-    There are many examples; run "python -m pyqtgraph.examples" for a menu.
-    Some (incomplete) documentation exists at this time.
-    - Easiest place to get documentation is at 
-      http://www.pyqtgraph.org/documentation
-    - If you acquired this code as a .tar.gz file from the website, then you can also look in 
-      doc/html.
-    - If you acquired this code via BZR, then you can build the documentation using sphinx.
-      From the documentation directory, run:
-          $ make html  
-    Please feel free to pester Luke or post to the forum if you need a specific 
-    section of documentation.

doc/extensions/qt_doc.py

+"""
+Extension for building Qt-like documentation.
+
+ - Method lists preceding the actual method documentation
+ - Inherited members documented separately
+ - Members inherited from Qt have links to qt-project documentation
+ - Signal documentation
+
+"""
+
+
+
+def setup(app):
+    # probably we will be making a wrapper around autodoc
+    app.setup_extension('sphinx.ext.autodoc')
+    
+    # would it be useful to define a new domain?
+    #app.add_domain(QtDomain) 
+    
+    ## Add new configuration options
+    app.add_config_value('todo_include_todos', False, False)
+
+    ## Nodes are the basic objects representing documentation directives
+    ## and roles
+    app.add_node(Todolist)
+    app.add_node(Todo,
+                 html=(visit_todo_node, depart_todo_node),
+                 latex=(visit_todo_node, depart_todo_node),
+                 text=(visit_todo_node, depart_todo_node))
+
+    ## New directives like ".. todo:"
+    app.add_directive('todo', TodoDirective)
+    app.add_directive('todolist', TodolistDirective)
+    
+    ## Connect callbacks to specific hooks in the build process
+    app.connect('doctree-resolved', process_todo_nodes)
+    app.connect('env-purge-doc', purge_todos)
+    
+
+from docutils import nodes
+from sphinx.util.compat import Directive
+from sphinx.util.compat import make_admonition
+
+
+# Just a general node
+class Todolist(nodes.General, nodes.Element):
+    pass
+
+# .. and its directive
+class TodolistDirective(Directive):
+    # all directives have 'run' method that returns a list of nodes
+    def run(self):
+        return [Todolist('')]
+
+
+
+
+# Admonition classes are like notes or warnings
+class Todo(nodes.Admonition, nodes.Element):
+    pass
+
+def visit_todo_node(self, node):
+    self.visit_admonition(node)
+
+def depart_todo_node(self, node):
+    self.depart_admonition(node)    
+
+class TodoDirective(Directive):
+
+    # this enables content in the directive
+    has_content = True
+
+    def run(self):
+        env = self.state.document.settings.env
+    
+        # create a new target node for linking to
+        targetid = "todo-%d" % env.new_serialno('todo')
+        targetnode = nodes.target('', '', ids=[targetid])
+
+        # make the admonition node
+        ad = make_admonition(Todo, self.name, [('Todo')], self.options,
+                             self.content, self.lineno, self.content_offset,
+                             self.block_text, self.state, self.state_machine)
+
+        # store a handle in a global list of all todos
+        if not hasattr(env, 'todo_all_todos'):
+            env.todo_all_todos = []
+        env.todo_all_todos.append({
+            'docname': env.docname,
+            'lineno': self.lineno,
+            'todo': ad[0].deepcopy(),
+            'target': targetnode,
+        })
+
+        # return both the linking target and the node itself
+        return [targetnode] + ad
+
+
+# env data is persistent across source files so we purge whenever the source file has changed.
+def purge_todos(app, env, docname):
+    if not hasattr(env, 'todo_all_todos'):
+        return
+    env.todo_all_todos = [todo for todo in env.todo_all_todos
+                          if todo['docname'] != docname]
+                          
+
+# called at the end of resolving phase; we will convert temporary nodes
+# into finalized nodes
+def process_todo_nodes(app, doctree, fromdocname):
+    if not app.config.todo_include_todos:
+        for node in doctree.traverse(Todo):
+            node.parent.remove(node)
+
+    # Replace all todolist nodes with a list of the collected todos.
+    # Augment each todo with a backlink to the original location.
+    env = app.builder.env
+
+    for node in doctree.traverse(Todolist):
+        if not app.config.todo_include_todos:
+            node.replace_self([])
+            continue
+
+        content = []
+
+        for todo_info in env.todo_all_todos:
+            para = nodes.paragraph()
+            filename = env.doc2path(todo_info['docname'], base=None)
+            description = (
+                ('(The original entry is located in %s, line %d and can be found ') %
+                (filename, todo_info['lineno']))
+            para += nodes.Text(description, description)
+
+            # Create a reference
+            newnode = nodes.reference('', '')
+            innernode = nodes.emphasis(('here'), ('here'))
+            newnode['refdocname'] = todo_info['docname']
+            newnode['refuri'] = app.builder.get_relative_uri(
+                fromdocname, todo_info['docname'])
+            newnode['refuri'] += '#' + todo_info['target']['refid']
+            newnode.append(innernode)
+            para += newnode
+            para += nodes.Text('.)', '.)')
+
+            # Insert into the todolist
+            content.append(todo_info['todo'])
+            content.append(para)
+
+        node.replace_self(content)
+        

doc/source/3dgraphics/glgraphicsitem.rst

 GLGraphicsItem
 ==============
 
-.. autoclass:: pyqtgraph.opengl.GLGraphicsItem
+.. autoclass:: pyqtgraph.opengl.GLGraphicsItem.GLGraphicsItem
     :members:
 
-    .. automethod:: pyqtgraph.GLGraphicsItem.__init__
+    .. automethod:: pyqtgraph.opengl.GLGraphicsItem.GLGraphicsItem.__init__
 

doc/source/3dgraphics/gllineplotitem.rst

+GLLinePlotItem
+==============
+
+.. autoclass:: pyqtgraph.opengl.GLLinePlotItem
+    :members:
+
+    .. automethod:: pyqtgraph.opengl.GLLinePlotItem.__init__
+

doc/source/3dgraphics/index.rst

@@ -20,6 +20,7 @@ Contents:
     glvolumeitem
     glimageitem
     glmeshitem
+    gllineplotitem
     glaxisitem
     glgraphicsitem
     glscatterplotitem

doc/source/conf.py

@@ -18,6 +18,7 @@ import sys, os
 # documentation root, use os.path.abspath to make it absolute, like shown here.
 path = os.path.dirname(os.path.abspath(__file__))
 sys.path.insert(0, os.path.join(path, '..', '..'))
+sys.path.insert(0, os.path.join(path, '..', 'extensions'))
 
 # -- General configuration -----------------------------------------------------
 
@@ -215,3 +216,4 @@ man_pages = [
     ('index', 'pyqtgraph', 'pyqtgraph Documentation',
      ['Luke Campagnola'], 1)
 ]
+

doc/source/functions.rst

@@ -97,6 +97,6 @@ Miscellaneous Functions
 
 .. autofunction:: pyqtgraph.systemInfo
 
-
+.. autofunction:: pyqtgraph.exit
 
 

doc/source/qtcrashcourse.rst

@@ -76,15 +76,23 @@ Qt detects and reacts to user interaction by executing its *event loop*.
 GraphicsView and GraphicsItems