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{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Pipeline to create research dataset"
]
},
{
"cell_type": "code",
Philipp Schneider
committed
"execution_count": 7,
"outputs": [],
"source": [
"from rdflib import Graph\n",
"\n",
"def merge_graphs(input_path_1, input_path_2, output_path):\n",
" g = Graph()\n",
" g.parse(input_path_1)\n",
" g.parse(input_path_2)\n",
" g.serialize(destination=output_path, format='ttl')"
]
},
{
"cell_type": "code",
"execution_count": 9,
"metadata": {
"tags": []
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"/home/jovyan/dho-knowledge-graph-data-integration/src/rdf-mappings/map-tblBranch.py:463: DtypeWarning: Columns (2,9,11,16,17,18,19,20,21,31,38,39,49,56,58,62,67,71,72,73,74,75,77,79,82,85,86,88,94,97,98,99,100,102,104,106,109,110,112,114,117,118,119,122,124,125,126,127,128,129,130,131,132,133,134,135,136,138,139,140,141,142,143,144,145,149,150,151,152,153,154,157,165,166,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,188,189,190,194,196) have mixed types. Specify dtype option on import or set low_memory=False.\n",
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" df_tblBranch = pd.read_csv(csv_input_path, sep='\\t')\n",
" Column Column2 BranchID ... GpSel TinctChanged Column 201\n",
"0 0 NaN 1 ... NaN 1.0 NaN\n",
"1 1 NaN 2 ... NaN 1.0 NaN\n",
"2 2 NaN 3 ... NaN 1.0 NaN\n",
"3 3 NaN 4 ... NaN 1.0 NaN\n",
"4 4 NaN 5 ... NaN 1.0 NaN\n",
"... ... ... ... ... ... ... ...\n",
"40859 40859 NaN 8318_A_1 ... NaN NaN NaN\n",
"40860 40860 NaN 8425_1 ... 0.0 NaN 0.0\n",
"40861 40861 NaN 8425_A_1 ... NaN NaN NaN\n",
"40862 40862 NaN 8425_B_1 ... NaN NaN NaN\n",
"40863 40863 NaN 13770_1 ... 0.0 NaN 1.0\n",
"\n",
"[40864 rows x 205 columns]\n",
"chief\n",
"compon\n",
"chief\n",
"chief\n",
"chief\n",
"chief\n",
"chief\n",
"eschutch\n",
"chief\n",
"chief\n",
"chief\n",
"chief\n",
"chief\n",
"shield\n",
"stag\n",
"compon de Harcourt\n",
"chief\n",
"chief\n",
"chief\n",
"\n",
"chief\n",
"border\n",
"lozenge\n",
"lozenge\n",
"\n",
"\n",
"chief\n",
"chief\n",
"lozenge\n",
"chief\n",
"chief\n",
"compon\n",
"compon\n",
"escuch\n",
"chief\n",
"\n",
"\n",
"escurch\n",
"banner\n",
"chief\n",
"banner\n",
"banner\n",
"banner\n",
"banner\n",
"banner\n",
"escuch\n",
"Created data/rdf-output/research-dataset/knowledge-graph-blazon-research-dataset.ttl\n",
"Created data/rdf-output/research-dataset/knowledge-graph-blazon-research-dataset.jsonld\n",
"Export TBox to file...\n",
"Create data/rdf-output/digital-heraldry-ontology.ttl\n"
]
}
],
"source": [
"!python src/rdf-mappings/map-tblBranch.py"
]
},
{
"cell_type": "code",
"execution_count": 11,
"metadata": {
"tags": []
},
"merge_graphs('data/rdf-output/research-dataset/knowledge-graph-blazon-research-dataset.ttl', 'data/ontologies/digital-heraldry-ontology-heraldry.ttl', 'data/rdf-output/research-dataset/knowledge-graph-blazon-research-dataset.ttl')"
"source": [
"Add class structure for `dhoh:Modifier`s"
]
},
{
"cell_type": "code",
"execution_count": 12,
"metadata": {
"tags": []
},
"outputs": [],
"source": [
"merge_graphs('data/rdf-output/research-dataset/knowledge-graph-blazon-research-dataset.ttl', 'data/ontologies/research-dataset/modifier-class-structure.ttl', 'data/rdf-output/research-dataset/knowledge-graph-blazon-research-dataset.ttl')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Create the occurances of the coats of arms (`dhor:CoatOfArmsRepresentation`) from `tblArmItem`"
]
},
{
"cell_type": "code",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"src/rdf-mappings/map-tblArmItems.py:79: DtypeWarning: Columns (0,7,10,11,13,14,42) have mixed types. Specify dtype option on import or set low_memory=False.\n",
" df_tblArmItems = pd.read_csv(csv_input_path, sep='\\t')\n",
"src/rdf-mappings/map-tblArmItems.py:92: FutureWarning: Inferring datetime64[ns] from data containing strings is deprecated and will be removed in a future version. To retain the old behavior explicitly pass Series(data, dtype=datetime64[ns])\n",
" df_metadata = pd.read_excel(metadata_file)\n",
" Column ArmItemID ArmCode ItemNr ... CreMulti CreTint CreOrnIDR TGmember\n",
"61929 22033.0 25909.0 QPB 2.0 ... NaN NaN NaN False\n",
"61930 22034.0 25910.0 QPB 3.0 ... NaN NaN NaN False\n",
"61931 22035.0 25911.0 QPB 4.0 ... NaN NaN NaN False\n",
"61932 22036.0 25912.0 QPB 5.0 ... NaN NaN NaN False\n",
"61933 22037.0 25913.0 QPB 6.0 ... NaN NaN NaN False\n",
"... ... ... ... ... ... ... ... ... ...\n",
"62173 61935.0 72915.0 QPB 245.0 ... NaN NaN NaN False\n",
"62174 61936.0 72916.0 QPB 246.0 ... NaN NaN NaN False\n",
"62175 61937.0 72917.0 QPB 247.0 ... NaN NaN NaN False\n",
"62176 61938.0 72918.0 QPB 248.0 ... NaN NaN NaN False\n",
"62177 61939.0 72919.0 QPB 249.0 ... NaN NaN NaN False\n",
"[249 rows x 46 columns]\n",
"Created data/rdf-output/research-dataset/knowledge-graph-representation-research-dataset.ttl\n",
"Created data/rdf-output/research-dataset/knowledge-graph-representation-research-dataset.jsonld\n"
]
}
],
"source": [
"!python src/rdf-mappings/map-tblArmItems.py"
]
},
{
"cell_type": "code",
"outputs": [],
"source": [
"merge_graphs('data/rdf-output/research-dataset/knowledge-graph-representation-research-dataset.ttl' , 'data/ontologies/digital-heraldry-ontology-representation.ttl', 'data/rdf-output/research-dataset/knowledge-graph-representation-research-dataset.ttl')"
]
},
{
"cell_type": "code",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"src/rdf-mappings/integrate_manuscript_metadata_into_kg.py:69: FutureWarning: Inferring datetime64[ns] from data containing strings is deprecated and will be removed in a future version. To retain the old behavior explicitly pass Series(data, dtype=datetime64[ns])\n",
" df_metadata = pd.read_excel(metadata_file)\n",
" dho-kg-id Bestellen ... Zugriff_Internet.1 Herkunft\n",
"1004 1005.0 NaN ... NaN Summary\n",
"[1 rows x 94 columns]\n",
"Creating manuscript entities...\n",
"Created data/rdf-output/research-dataset/knowledge-graph-object-research-dataset.ttl\n",
"Created data/rdf-output/research-dataset/knowledge-graph-object-research-dataset.jsonld\n",
"Loading Knowledge Graph file...\n",
"Linking coat of arms representations to manuscript entities...\n",
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"MS-QPB-25909\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25910\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25911\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25912\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25913\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25914\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25915\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25916\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25917\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25918\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25919\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25920\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25921\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25922\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25923\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25924\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25925\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25926\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25927\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25928\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25929\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25930\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25931\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25932\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25933\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25934\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25935\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25936\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25937\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25938\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25939\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25940\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25941\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25942\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25943\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25944\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25945\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25946\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25947\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25948\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25949\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25950\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25952\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25953\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25954\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25955\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25956\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25957\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25958\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25959\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25960\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25961\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25962\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25963\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25964\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25965\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25966\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25967\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25968\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25969\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25970\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25971\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25972\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25973\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25974\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25975\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25976\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25977\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25978\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25979\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25980\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25981\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25982\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25983\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25985\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25986\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25987\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25988\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25989\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25990\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25991\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25992\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25993\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25994\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25995\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25996\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25997\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25998\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-25999\n",
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"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
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"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72874\n",
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"MS-QPB-72875\n",
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"MS-QPB-72876\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72877\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72878\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
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"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
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"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
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"MS-QPB-72910\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72911\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
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"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72913\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72914\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72915\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72916\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72917\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72918\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
"MS-QPB-72919\n",
"http://digitalheraldry.org/digital-heraldry-ontology/object#MS-QPB\n",
]
}
],
"source": [
"!python src/rdf-mappings/integrate_manuscript_metadata_into_kg.py"
]
},
{
"cell_type": "code",
"source": [
"merge_graphs('data/rdf-output/research-dataset/knowledge-graph-object-research-dataset.ttl', 'data/ontologies/digital-heraldry-ontology-object.ttl', 'data/rdf-output/research-dataset/knowledge-graph-object-research-dataset.ttl')"
]
},
{
"cell_type": "code",
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Merging data/rdf-output/research-dataset/knowledge-graph-blazon-research-dataset.ttl into Knowledge Graph\n",
"Traceback (most recent call last):\n",
" File \"src/rdf-mappings/merge_rdf_files_into_kg.py\", line 48, in <module>\n",
" g.parse(rdf_file)\n",
" File \"/Users/pschneider/opt/anaconda3/envs/dho_kg_integration/lib/python3.8/site-packages/rdflib/graph.py\", line 1234, in parse\n",
" source = create_input_source(\n",
" File \"/Users/pschneider/opt/anaconda3/envs/dho_kg_integration/lib/python3.8/site-packages/rdflib/parser.py\", line 326, in create_input_source\n",
" ) = _create_input_source_from_location(\n",
" File \"/Users/pschneider/opt/anaconda3/envs/dho_kg_integration/lib/python3.8/site-packages/rdflib/parser.py\", line 373, in _create_input_source_from_location\n",
" file = open(filename, \"rb\")\n",
"FileNotFoundError: [Errno 2] No such file or directory: '/Users/pschneider/Documents/Digital Heraldry/Repositorien/data/rdf-output/research-dataset/knowledge-graph-blazon-research-dataset.ttl'\n"
"source": [
"!python src/rdf-mappings/merge_rdf_files_into_kg.py -i data/rdf-output/research-dataset/knowledge-graph-blazon-research-dataset.ttl data/rdf-output/research-dataset/knowledge-graph-object-research-dataset.ttl data/rdf-output/research-dataset/knowledge-graph-representation-research-dataset.ttl"
]
}
],
"metadata": {
"kernelspec": {
"language": "python",
"name": "python3"
},
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
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"vscode": {
"interpreter": {
"hash": "86152e4984a8eeddffd673b8a40ea9a3bfe66b19f1d4e2fbcbd65936a43d9c06"
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