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# -*- coding: utf-8 -*-
"""
/***************************************************************************

Benjamin Jakimow
committed
EO Time Series Viewer
-------------------
begin : 2015-08-20
git sha : $Format:%H$
copyright : (C) 2017 by HU-Berlin
email : benjamin.jakimow@geo.hu-berlin.de
***************************************************************************/
/***************************************************************************
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
***************************************************************************/
"""
# noinspection PyPep8Naming
import os, sys, math, re, io, fnmatch
from collections import defaultdict
from qgis.core import QgsPointXY, QgsCoordinateReferenceSystem, QgsCoordinateTransform, QgsApplication, QgsRectangle, \
QgsMapLayer, QgsRasterLayer, QgsVectorLayer, QgsRasterRenderer, QgsFeatureRenderer, QgsRasterDataProvider, QgsUnitTypes, QgsSingleBandPseudoColorRenderer
#from qgis.gui import *
from qgis.gui import QgsMapCanvas, QgisInterface
from PyQt5.QtGui import *
from PyQt5.QtXml import QDomDocument
from PyQt5 import uic
import weakref
import numpy as np

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jp = os.path.join
dn = os.path.dirname
from timeseriesviewer import DIR_UI, DIR_REPO
from timeseriesviewer import messageLog
def qgisInstance():
"""
If existent, returns the QGIS Instance.
:return: QgisInterface | None
"""
from timeseriesviewer.main import TimeSeriesViewer
if isinstance(qgis.utils.iface, QgisInterface) and \
not isinstance(qgis.utils.iface, TimeSeriesViewer):
return qgis.utils.iface
else:
return None
def file_search(rootdir, pattern, recursive=False, ignoreCase=False, directories=False):
"""
Searches for files
:param rootdir: root directory to search for files.
:param pattern: wildcard ("my*files.*") or regular expression to describe the file name.
:param recursive: set True to search recursively.
:param ignoreCase: set True to ignore character case.
:param directories: set True to search for directories instead of files.
:return: [list-of-paths]
"""
assert os.path.isdir(rootdir), "Path is not a directory:{}".format(rootdir)
regType = type(re.compile('.*'))
results = []
for root, dirs, files in os.walk(rootdir):
if directories:
files = dirs
for file in files:
if isinstance(pattern, regType):
if pattern.search(file):
path = os.path.join(root, file)
results.append(path)
elif (ignoreCase and fnmatch.fnmatch(file.lower(), pattern.lower())) \
or fnmatch.fnmatch(file, pattern):
path = os.path.join(root, file)
results.append(path)
if not recursive:
break
pass
return results

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NEXT_COLOR_HUE_DELTA_CON = 10
NEXT_COLOR_HUE_DELTA_CAT = 100
def nextColor(color, mode='cat'):
"""
Returns another color
:param color: the previous color
:param mode: 'cat' - for categorical color jump (next color looks pretty different to previous)
'con' - for continuous color jump (next color looks similar to previous)
:return:
"""
assert mode in ['cat','con']
assert isinstance(color, QColor)
hue, sat, value, alpha = color.getHsl()
if mode == 'cat':
hue += NEXT_COLOR_HUE_DELTA_CAT
elif mode == 'con':
hue += NEXT_COLOR_HUE_DELTA_CON
if sat == 0:
sat = 255
value = 128
alpha = 255
s = ""
while hue > 360:
hue -= 360
return QColor.fromHsl(hue, sat, value, alpha)
def createQgsField(name : str, exampleValue, comment:str=None):
"""
Create a QgsField using a Python-datatype exampleValue
:param name: field name
:param exampleValue: value, can be any type
:param comment: (optional) field comment.
:return: QgsField
"""
t = type(exampleValue)
if t in [str]:
return QgsField(name, QVariant.String, 'varchar', comment=comment)
elif t in [bool]:
return QgsField(name, QVariant.Bool, 'int', len=1, comment=comment)
elif t in [int, np.int32, np.int64]:
return QgsField(name, QVariant.Int, 'int', comment=comment)
elif t in [float, np.double, np.float16, np.float32, np.float64]:
return QgsField(name, QVariant.Double, 'double', comment=comment)
elif isinstance(exampleValue, np.ndarray):
return QgsField(name, QVariant.String, 'varchar', comment=comment)
elif isinstance(exampleValue, list):
assert len(exampleValue) > 0, 'need at least one value in provided list'
v = exampleValue[0]
prototype = createQgsField(name, v)
subType = prototype.type()
typeName = prototype.typeName()
return QgsField(name, QVariant.List, typeName, comment=comment, subType=subType)
else:
raise NotImplemented()

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def setQgsFieldValue(feature:QgsFeature, field, value):
"""
Wrties the Python value v into a QgsFeature field, taking care of required conversions
:param feature: QgsFeature
:param field: QgsField | field name (str) | field index (int)
:param value: any python value
"""
if isinstance(field, int):
field = feature.fields().at(field)
elif isinstance(field, str):
field = feature.fields().at(feature.fieldNameIndex(field))
assert isinstance(field, QgsField)
if value is None:
value = QVariant.NULL
if field.type() == QVariant.String:
value = str(value)
elif field.type() in [QVariant.Int, QVariant.Bool]:
value = int(value)
elif field.type() in [QVariant.Double]:
value = float(value)
else:
raise NotImplementedError()
# i = feature.fieldNameIndex(field.name())
feature.setAttribute(field.name(), value)
def appendItemsToMenu(menu, itemsToAdd):
"""
Appends items to QMenu "menu"
:param menu: the QMenu to be extended
:param itemsToAdd: QMenu or [list-of-QActions-or-QMenus]
:return: menu
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"""
assert isinstance(menu, QMenu)
if isinstance(itemsToAdd, QMenu):
itemsToAdd = itemsToAdd.children()
if not isinstance(itemsToAdd, list):
itemsToAdd = [itemsToAdd]
for item in itemsToAdd:
if isinstance(item, QAction):
#item.setParent(menu)
a = menu.addAction(item.text(), item.triggered, item.shortcut())
a.setEnabled(item.isEnabled())
a.setIcon(item.icon())
menu.addAction(a)
s = ""
elif isinstance(item, QMenu):
item.setParent(menu)
menu.addMenu(menu)
else:
s = ""
return menu
def allSubclasses(cls):
"""
Returns all subclasses of class 'cls'
Thx to: http://stackoverflow.com/questions/3862310/how-can-i-find-all-subclasses-of-a-class-given-its-name
:param cls:
:return:
"""
return cls.__subclasses__() + [g for s in cls.__subclasses__()
for g in allSubclasses(s)]
def scaledUnitString(num, infix=' ', suffix='B', div=1000):
"""
Returns a human-readable file size string.
thanks to Fred Cirera
http://stackoverflow.com/questions/1094841/reusable-library-to-get-human-readable-version-of-file-size
:param num: number in bytes
:param suffix: 'B' for bytes by default.
:param div: divisor of num, 1000 by default.
:return: the file size string
"""
for unit in ['','K','M','G','T','P','E','Z']:
if abs(num) < div:
return "{:3.1f}{}{}{}".format(num, infix, unit, suffix)
return "{:.1f}{}{}{}".format(num, infix, unit, suffix)
class SpatialPoint(QgsPointXY):
"""
Object to keep QgsPoint and QgsCoordinateReferenceSystem together
"""
@staticmethod
def fromMapCanvasCenter(mapCanvas):
assert isinstance(mapCanvas, QgsMapCanvas)
crs = mapCanvas.mapSettings().destinationCrs()
return SpatialPoint(crs, mapCanvas.center())
@staticmethod
def fromSpatialExtent(spatialExtent):
assert isinstance(spatialExtent, SpatialExtent)
crs = spatialExtent.crs()
return SpatialPoint(crs, spatialExtent.center())
if not isinstance(crs, QgsCoordinateReferenceSystem):
crs = QgsCoordinateReferenceSystem(crs)
assert isinstance(crs, QgsCoordinateReferenceSystem)
super(SpatialPoint, self).__init__(*args)
self.mCrs = crs
def __hash__(self):
return hash(str(self))
def setCrs(self, crs):
assert isinstance(crs, QgsCoordinateReferenceSystem)
self.mCrs = crs
def crs(self):
return self.mCrs
def toPixelPosition(self, rasterDataSource, allowOutOfRaster=False):
"""
Returns the pixel position of this SpatialPoint within the rasterDataSource
:param rasterDataSource: gdal.Dataset
:param allowOutOfRaster: set True to return out-of-raster pixel positions, e.g. QPoint(-1,0)
:return: the pixel position as QPoint
"""
ds = gdalDataset(rasterDataSource)
ns, nl = ds.RasterXSize, ds.RasterYSize
gt = ds.GetGeoTransform()
pt = self.toCrs(ds.GetProjection())
if pt is None:
return None
px = geo2px(pt, gt)
if not allowOutOfRaster:
if px.x() < 0 or px.x() >= ns:
return None
if px.y() < 0 or px.y() >= nl:
return None
return px
def toCrs(self, crs):
assert isinstance(crs, QgsCoordinateReferenceSystem)
pt = QgsPointXY(self)
pt = saveTransform(pt, self.mCrs, crs)
return SpatialPoint(crs, pt) if pt else None
def __reduce_ex__(self, protocol):
return self.__class__, (self.crs().toWkt(), self.x(), self.y()), {}
def __eq__(self, other):
if not isinstance(other, SpatialPoint):
return False
return self.x() == other.x() and \
self.y() == other.y() and \
self.crs() == other.crs()
return SpatialPoint(self.crs(), self.x(), self.y())
def __str__(self):
return self.__repr__()
if self.crs().mapUnits() == QgsUnitTypes.DistanceDegrees:
return '{:.1f} {:.1f} {}'.format(self.x(), self.y(), self.crs().authid())
else:
return '{:.5f} {:.5f} {:}'.format(self.x(), self.y(), self.crs().authid())
def findParent(qObject, parentType, checkInstance = False):
parent = qObject.parent()
if checkInstance:
while parent != None and not isinstance(parent, parentType):
parent = parent.parent()
else:
while parent != None and type(parent) != parentType:
parent = parent.parent()
return parent
def saveTransform(geom, crs1, crs2):
assert isinstance(crs1, QgsCoordinateReferenceSystem)
assert isinstance(crs2, QgsCoordinateReferenceSystem)
result = None
if isinstance(geom, QgsRectangle):
if geom.isEmpty():
return None
transform = QgsCoordinateTransform()
transform.setSourceCrs(crs1)
transform.setDestinationCrs(crs2)
try:
rect = transform.transformBoundingBox(geom);
result = SpatialExtent(crs2, rect)
except:
messageLog('Can not transform from {} to {} on rectangle {}'.format( \
crs1.description(), crs2.description(), str(geom)))
elif isinstance(geom, QgsPointXY):
transform = QgsCoordinateTransform();
transform.setSourceCrs(crs1)
transform.setDestinationCrs(crs2)
pt = transform.transform(geom);
result = SpatialPoint(crs2, pt)
except:
messageLog('Can not transform from {} to {} on QgsPointXY {}'.format( \
crs1.description(), crs2.description(), str(geom)))
return result
def gdalDataset(pathOrDataset, eAccess=gdal.GA_ReadOnly):
"""
:param pathOrDataset: path or gdal.Dataset
:return: gdal.Dataset
"""
if not isinstance(pathOrDataset, gdal.Dataset):
pathOrDataset = gdal.Open(pathOrDataset, eAccess)
assert isinstance(pathOrDataset, gdal.Dataset)
return pathOrDataset
def geo2pxF(geo, gt):
"""
Returns the pixel position related to a Geo-Coordinate in floating point precision.
:param geo: Geo-Coordinate as QgsPoint
:param gt: GDAL Geo-Transformation tuple, as described in http://www.gdal.org/gdal_datamodel.html
:return: pixel position as QPointF
"""
assert isinstance(geo, QgsPointXY)
# see http://www.gdal.org/gdal_datamodel.html
px = (geo.x() - gt[0]) / gt[1] # x pixel
py = (geo.y() - gt[3]) / gt[5] # y pixel
return QPointF(px,py)
def createGeoTransform(gsd, ul_x, ul_y):
"""
Create a GDAL Affine GeoTransform vector for north-up images.
See http://www.gdal.org/gdal_datamodel.html for details
:param gsd: ground-sampling-distance / pixel-size
:param ul_x: upper-left X
:param ul_y: upper-left Y
:return: (tuple)
"""
if isinstance(gsd, tuple) or isinstance(gsd, list):
gt1 = gsd[0] #pixel width
gt5 = gsd[1] #pixel height
else:
gsd = float(gsd)
gt1 = gt5 = gsd #pixel width == pixel height
gt0 = ul_x
gt3 = ul_y
gt2 = gt4 = 0
return (gt0, gt1, gt2, gt3, gt4, gt5)
def geo2px(geo, gt):
"""
Returns the pixel position related to a Geo-Coordinate as integer number.
Floating-point coordinate are casted to integer coordinate, e.g. the pixel coordinate (0.815, 23.42) is returned as (0,23)
:param geo: Geo-Coordinate as QgsPointXY
:param gt: GDAL Geo-Transformation tuple, as described in http://www.gdal.org/gdal_datamodel.html
:return: pixel position as QPpint
"""
px = geo2pxF(geo, gt)
return QPoint(int(px.x()), int(px.y()))

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def px2geo(px, gt, pxCenter=True):
"""
Converts a pixel coordinate into a geo-coordinate

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:param px: QPoint() with pixel coordinates
:param gt: geo-transformation
:param pxCenter: True to return geo-coordinate of pixel center, False to return upper-left edge

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#see http://www.gdal.org/gdal_datamodel.html

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gx = gt[0] + px.x()*gt[1]+px.y()*gt[2]
gy = gt[3] + px.x()*gt[4]+px.y()*gt[5]

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if pxCenter:
p2 = px2geo(QPoint(px.x()+1, px.y()+1), gt, pxCenter=False)
gx = 0.5*(gx + p2.x())
gy = 0.5*(gy + p2.y())
return QgsPointXY(gx, gy)
class SpatialExtent(QgsRectangle):
"""
Object to keep QgsRectangle and QgsCoordinateReferenceSystem together
"""
@staticmethod
def fromMapCanvas(mapCanvas, fullExtent=False):
assert isinstance(mapCanvas, QgsMapCanvas)
if fullExtent:
extent = mapCanvas.fullExtent()
else:
extent = mapCanvas.extent()
crs = mapCanvas.mapSettings().destinationCrs()
return SpatialExtent(crs, extent)

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@staticmethod
def world():
crs = QgsCoordinateReferenceSystem('EPSG:4326')
ext = QgsRectangle(-180,-90,180,90)
return SpatialExtent(crs, ext)
@staticmethod
def fromRasterSource(pathSrc):
ds = gdalDataset(pathSrc)
assert isinstance(ds, gdal.Dataset)
ns, nl = ds.RasterXSize, ds.RasterYSize
gt = ds.GetGeoTransform()
crs = QgsCoordinateReferenceSystem(ds.GetProjection())
xValues = []
yValues = []
for x in [0, ns]:
for y in [0, nl]:
px = px2geo(QPoint(x,y), gt)
xValues.append(px.x())
yValues.append(px.y())
return SpatialExtent(crs, min(xValues), min(yValues),
max(xValues), max(yValues))
@staticmethod
def fromLayer(mapLayer):
assert isinstance(mapLayer, QgsMapLayer)
extent = mapLayer.extent()
crs = mapLayer.crs()
return SpatialExtent(crs, extent)
def __init__(self, crs, *args):
if not isinstance(crs, QgsCoordinateReferenceSystem):
crs = QgsCoordinateReferenceSystem(crs)
assert isinstance(crs, QgsCoordinateReferenceSystem)
super(SpatialExtent, self).__init__(*args)
self.mCrs = crs
def setCrs(self, crs):
assert isinstance(crs, QgsCoordinateReferenceSystem)
self.mCrs = crs
def crs(self):
return self.mCrs
def toCrs(self, crs):
assert isinstance(crs, QgsCoordinateReferenceSystem)
box = QgsRectangle(self)
if self.mCrs != crs:
box = saveTransform(box, self.mCrs, crs)
return SpatialExtent(crs, box) if box else None
def spatialCenter(self):
return SpatialPoint(self.crs(), self.center())
def combineExtentWith(self, *args):
if args is None:
return
elif isinstance(args[0], SpatialExtent):
ext = args[0]
extent2 = ext.toCrs(self.crs())
self.combineExtentWith(QgsRectangle(extent2))
else:
super(SpatialExtent, self).combineExtentWith(*args)
return self
def setCenter(self, centerPoint, crs=None):
if crs and crs != self.crs():
trans = QgsCoordinateTransform(crs, self.crs())
centerPoint = trans.transform(centerPoint)
delta = centerPoint - self.center()
self.setXMaximum(self.xMaximum() + delta.x())
self.setXMinimum(self.xMinimum() + delta.x())
self.setYMaximum(self.yMaximum() + delta.y())
self.setYMinimum(self.yMinimum() + delta.y())
return self
def __cmp__(self, other):
if other is None: return 1
s = ""
def upperRightPt(self):
return QgsPointXY(*self.upperRight())
def upperLeftPt(self):
return QgsPointXY(*self.upperLeft())
def lowerRightPt(self):
return QgsPointXY(*self.lowerRight())
def lowerLeftPt(self):
return QgsPointXY(*self.lowerLeft())
def upperRight(self):
return self.xMaximum(), self.yMaximum()
def upperLeft(self):
return self.xMinimum(), self.yMaximum()
def lowerRight(self):
return self.xMaximum(), self.yMinimum()
def lowerLeft(self):
return self.xMinimum(), self.yMinimum()
def __eq__(self, other):
return self.toString() == other.toString()
def __sub__(self, other):
raise NotImplementedError()
def __mul__(self, other):
raise NotImplementedError()
def __copy__(self):
return SpatialExtent(self.crs(), QgsRectangle(self))
def __reduce_ex__(self, protocol):
return self.__class__, (self.crs().toWkt(),
self.xMinimum(), self.yMinimum(),
self.xMaximum(), self.yMaximum()
), {}
def __hash__(self):
return hash(str(self))
def __str__(self):
return self.__repr__()
def __repr__(self):
return '{} {} {}'.format(self.upperLeft(), self.lowerRight(), self.crs().authid())
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