Newer
Older
# -*- coding: utf-8 -*-
"""
/***************************************************************************
HUB TimeSeriesViewer
-------------------
begin : 2017-08-04
git sha : $Format:%H$
copyright : (C) 2017 by HU-Berlin
email : benjamin.jakimow@geo.hu-berlin.de
***************************************************************************/
/***************************************************************************
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
***************************************************************************/
"""
# noinspection PyPep8Naming
import os, sys, pickle, datetime
from qgis.gui import *
from qgis.core import *
from PyQt5.QtCore import *
from PyQt5.QtXml import *
from PyQt5.QtGui import *
from timeseriesviewer import jp, SETTINGS
from timeseriesviewer.timeseries import *
from timeseriesviewer.utils import SpatialExtent, SpatialPoint, px2geo
from timeseriesviewer.ui.docks import TsvDockWidgetBase, loadUI
from timeseriesviewer.plotstyling import PlotStyle, PlotStyleButton
from timeseriesviewer.pixelloader import PixelLoader, PixelLoaderTask
from timeseriesviewer.sensorvisualization import SensorListModel
from timeseriesviewer.temporalprofiles2d import *
from timeseriesviewer.temporalprofiles3d import *
from timeseriesviewer.temporalprofiles3d import LABEL_EXPRESSION_3D
import pyqtgraph as pg
from pyqtgraph import functions as fn
from pyqtgraph import AxisItem
import datetime
from osgeo import gdal, gdal_array
import numpy as np
MATPLOTLIB_AVAILABLE = False
try:
import timeseriesviewer.temporalprofiles3dMPL
MATPLOTLIB_AVAILABLE = True
except Exception as ex:
print('unable to import matlotlib based 3d plotting:\n{}'.format(ex))
#import OpenGL
from timeseriesviewer.temporalprofiles3d import *
except Exception as ex:
print('unable to import OpenGL based packages:\n{}'.format(ex))
def getTextColorWithContrast(c):
assert isinstance(c, QColor)
if c.lightness() < 0.5:
return QColor('white')
else:
return QColor('black')
def selectedModelIndices(tableView):
assert isinstance(tableView, QTableView)
result = {}
sm = tableView.selectionModel()
m = tableView.model()
if isinstance(sm, QItemSelectionModel) and isinstance(m, QAbstractItemModel):
for idx in sm.selectedIndexes():
assert isinstance(idx, QModelIndex)
if idx.row() not in result.keys():
result[idx.row()] = idx
return result.values()
def __init__(self, *args, **kwds):
# menu creation is deferred because it is expensive and often
# the user will never see the menu anyway.
self.menu = None
def boundingRect(self):
return super(_SensorPoints,self).boundingRect()
def paint(self, p, *args):
super(_SensorPoints, self).paint(p, *args)
# On right-click, raise the context menu
def mouseClickEvent(self, ev):
if ev.button() == QtCore.Qt.RightButton:
if self.raiseContextMenu(ev):
ev.accept()
def raiseContextMenu(self, ev):
menu = self.getContextMenus()
# Let the scene add on to the end of our context menu
# (this is optional)
menu = self.scene().addParentContextMenus(self, menu, ev)
pos = ev.screenPos()
menu.popup(QtCore.QPoint(pos.x(), pos.y()))
return True
# This method will be called when this item's _children_ want to raise
# a context menu that includes their parents' menus.
def getContextMenus(self, event=None):
if self.menu is None:
self.menu = QMenu()
self.menu.setTitle(self.name + " options..")
green = QAction("Turn green", self.menu)
green.triggered.connect(self.setGreen)
self.menu.addAction(green)
self.menu.green = green
blue = QAction("Turn blue", self.menu)
blue.triggered.connect(self.setBlue)
self.menu.addAction(blue)
self.menu.green = blue
alpha = QWidgetAction(self.menu)
alphaSlider = QSlider()
alphaSlider.setOrientation(QtCore.Qt.Horizontal)
alphaSlider.setMaximum(255)
alphaSlider.setValue(255)
alphaSlider.valueChanged.connect(self.setAlpha)
alpha.setDefaultWidget(alphaSlider)
self.menu.addAction(alpha)
self.menu.alpha = alpha
self.menu.alphaSlider = alphaSlider
return self.menu
class PlotSettingsModel2DWidgetDelegate(QStyledItemDelegate):
"""
def __init__(self, tableView, timeSeries, temporalProfileListModel, parent=None):
assert isinstance(tableView, QTableView)
assert isinstance(timeSeries, TimeSeries)
assert isinstance(temporalProfileListModel, TemporalProfileCollectionListModel)
super(PlotSettingsModel2DWidgetDelegate, self).__init__(parent=parent)
self._preferedSize = QgsFieldExpressionWidget().sizeHint()
self.mTableView = tableView
self.mTimeSeries = timeSeries
self.mTemporalProfileListModel = temporalProfileListModel
self.mSensorLayers = {}
def setItemDelegates(self, tableView):
assert isinstance(tableView, QTableView)
model = tableView.model()
assert isinstance(model, PlotSettingsModel2D)
for c in [model.cnSensor, model.cnExpression, model.cnStyle, model.cnTemporalProfile]:
def getColumnName(self, index):
assert index.isValid()
assert isinstance(model, PlotSettingsModel2D)
"""
def sizeHint(self, options, index):
s = super(ExpressionDelegate, self).sizeHint(options, index)
exprString = self.tableView.model().data(index)
l = QLabel()
l.setText(exprString)
x = l.sizeHint().width() + 100
s = QSize(x, s.height())
return self._preferedSize
"""
def exampleLyr(self, sensor):
assert isinstance(sensor, SensorInstrument)
if sensor not in self.mSensorLayers.keys():
crs = QgsCoordinateReferenceSystem('EPSG:4862')
uri = 'Point?crs={}'.format(crs.authid())
lyr = QgsVectorLayer(uri, 'LOCATIONS', 'memory')
f = sensorExampleQgsFeature(sensor)
assert isinstance(f, QgsFeature)
assert lyr.startEditing()
for field in f.fields():
lyr.addAttribute(field)
lyr.addFeature(f)
lyr.commitChanges()
self.mSensorLayers[sensor] = lyr
return self.mSensorLayers[sensor]
def createEditor(self, parent, option, index):
cname = self.getColumnName(index)
if index.isValid() and isinstance(model, PlotSettingsModel2D):
if isinstance(plotStyle, TemporalProfile2DPlotStyle):
if cname == model.cnExpression and isinstance(plotStyle.sensor(), SensorInstrument):
w.setExpression(plotStyle.expression())
w.setLayer(self.exampleLyr(plotStyle.sensor()))
plotStyle.sigSensorChanged.connect(lambda s : w.setLayer(self.exampleLyr(s)))
w.setToolTip('Set an expression to specify the image band or calculate a spectral index.')
w.fieldChanged[str,bool].connect(lambda n, b : self.checkData(index, w, w.expression()))
elif cname == model.cnStyle:
w = PlotStyleButton(parent=parent)
w.setPlotStyle(plotStyle)
w.setToolTip('Set style.')
w.sigPlotStyleChanged.connect(lambda: self.checkData(index, w, w.plotStyle()))
elif cname == model.cnSensor:
w = QComboBox(parent=parent)
w.setModel(m)
elif cname == model.cnTemporalProfile:
w = QComboBox(parent=parent)
w.setModel(self.mTemporalProfileListModel)
return w
assert isinstance(index, QModelIndex)
model = self.mTableView.model()
if index.isValid() and isinstance(model, PlotSettingsModel2D):
plotStyle = model.idx2plotStyle(index)
assert isinstance(plotStyle, TemporalProfile2DPlotStyle)
if isinstance(w, QgsFieldExpressionWidget):
assert value == w.expression()
assert w.isExpressionValid(value) == w.isValidExpression()
if w.isValidExpression():
self.commitData.emit(w)
else:
s = ""
#print(('Delegate commit failed',w.asExpression()))
if isinstance(w, PlotStyleButton):
def setEditorData(self, editor, index):
cname = self.getColumnName(index)
if index.isValid() and isinstance(model, PlotSettingsModel2D):
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
cname = self.getColumnName(index)
if cname == model.cnExpression:
lastExpr = index.model().data(index, Qt.DisplayRole)
assert isinstance(editor, QgsFieldExpressionWidget)
editor.setProperty('lastexpr', lastExpr)
editor.setField(lastExpr)
elif cname == model.cnStyle:
style = index.data()
assert isinstance(editor, PlotStyleButton)
editor.setPlotStyle(style)
elif cname == model.cnSensor:
assert isinstance(editor, QComboBox)
m = editor.model()
assert isinstance(m, SensorListModel)
sensor = index.data(role=Qt.UserRole)
if isinstance(sensor, SensorInstrument):
idx = m.sensor2idx(sensor)
editor.setCurrentIndex(idx.row())
elif cname == model.cnTemporalProfile:
assert isinstance(editor, QComboBox)
m = editor.model()
assert isinstance(m, TemporalProfileCollectionListModel)
TP = index.data(role=Qt.UserRole)
if isinstance(TP, TemporalProfile):
idx = m.tp2idx(TP)
editor.setCurrentIndex(idx)
else:
raise NotImplementedError()
def setModelData(self, w, model, index):
cname = self.getColumnName(index)
if index.isValid() and isinstance(model, PlotSettingsModel2D):
if cname == model.cnExpression:
assert isinstance(w, QgsFieldExpressionWidget)
expr = w.asExpression()
exprLast = model.data(index, Qt.DisplayRole)
if w.isValidExpression() and expr != exprLast:
model.setData(index, w.asExpression(), Qt.EditRole)
elif cname == model.cnStyle:
assert isinstance(w, PlotStyleButton)
model.setData(index, w.plotStyle(), Qt.EditRole)
elif cname == model.cnSensor:
assert isinstance(w, QComboBox)
sensor = w.itemData(w.currentIndex(), role=Qt.UserRole)
assert isinstance(sensor, SensorInstrument)
model.setData(index, sensor, Qt.EditRole)
elif cname == model.cnTemporalProfile:
assert isinstance(w, QComboBox)
TP = w.itemData(w.currentIndex(), role=Qt.UserRole)
#assert isinstance(TP, TemporalProfile)
model.setData(index, TP, Qt.EditRole)
else:
raise NotImplementedError()
class PlotSettingsModel3DWidgetDelegate(QStyledItemDelegate):
"""
"""
def __init__(self, tableView, timeSeries, temporalProfileListModel, parent=None):
assert isinstance(tableView, QTableView)
assert isinstance(timeSeries, TimeSeries)
assert isinstance(temporalProfileListModel, TemporalProfileCollectionListModel)
super(PlotSettingsModel3DWidgetDelegate, self).__init__(parent=parent)
self._preferedSize = QgsFieldExpressionWidget().sizeHint()
self.mTableView = tableView
self.mTimeSeries = timeSeries
self.mTemporalProfileListModel = temporalProfileListModel
self.mSensorLayers = {}
self.mTemporalProfileListModel.dataChanged.connect(self.updateComboBoxes)
self.mTimeSeries.sigSensorRemoved.connect(self.updateComboBoxes)
def updateComboBoxes(self):
# assert isinstance(cb, QComboBox)
s = ""
def setItemDelegates(self, tableView):
assert isinstance(tableView, QTableView)
model = tableView.model()
assert isinstance(model, PlotSettingsModel3D)
for c in [model.cnSensor, model.cnExpression, model.cnStyle, model.cnTemporalProfile]:
tableView.setItemDelegateForColumn(i, self)
def getColumnName(self, index):
assert index.isValid()
model = index.model()
assert isinstance(model, PlotSettingsModel3D)
return model.columnNames[index.column()]
"""
def sizeHint(self, options, index):
s = super(ExpressionDelegate, self).sizeHint(options, index)
exprString = self.tableView.model().data(index)
l = QLabel()
l.setText(exprString)
x = l.sizeHint().width() + 100
s = QSize(x, s.height())
return self._preferedSize
"""
def createEditor(self, parent, option, index):
cname = self.getColumnName(index)
model = self.mTableView.model()
w = None
if index.isValid() and isinstance(model, PlotSettingsModel3D):
plotStyle = model.idx2plotStyle(index)
if isinstance(plotStyle, TemporalProfile3DPlotStyle):
if cname == model.cnExpression:
w = QgsFieldExpressionWidget(parent=parent)
w.setExpression(plotStyle.expression())
w.setLayer(self.exampleLyr(plotStyle.sensor()))
def onSensorAdded(s):
w.setLayer(self.exampleLyr(s))
#plotStyle.sigSensorChanged.connect(lambda s : w.setLayer(self.exampleLyr(s)))
plotStyle.sigSensorChanged.connect(onSensorAdded)
w.setExpressionDialogTitle('Values')
w.setToolTip('Set an expression to specify the image band or calculate a spectral index.')
w.fieldChanged[str,bool].connect(lambda n, b : self.checkData(index, w, w.expression()))
elif cname == model.cnStyle:
w = TemporalProfile3DPlotStyleButton(parent=parent)
w.setPlotStyle(plotStyle)
w.setToolTip('Set plot style')
w.sigPlotStyleChanged.connect(lambda: self.checkData(index, w, w.plotStyle()))
elif cname == model.cnSensor:
w = QComboBox(parent=parent)
m = SensorListModel(self.mTimeSeries)
w.setModel(m)
elif cname == model.cnTemporalProfile:
w = QComboBox(parent=parent)
w.setModel(self.mTemporalProfileListModel)
else:
raise NotImplementedError()
def exampleLyr(self, sensor):
if sensor not in self.mSensorLayers.keys():
crs = QgsCoordinateReferenceSystem('EPSG:4862')
uri = 'Point?crs={}'.format(crs.authid())
lyr = QgsVectorLayer(uri, 'LOCATIONS', 'memory')
assert sensor is None or isinstance(sensor, SensorInstrument)
f = sensorExampleQgsFeature(sensor, singleBandOnly=True)
assert isinstance(f, QgsFeature)
assert lyr.startEditing()
for field in f.fields():
lyr.addAttribute(field)
lyr.addFeature(f)
lyr.commitChanges()
self.mSensorLayers[sensor] = lyr
return self.mSensorLayers[sensor]
assert isinstance(index, QModelIndex)
model = self.mTableView.model()
if index.isValid() and isinstance(model, PlotSettingsModel3D):
plotStyle = model.idx2plotStyle(index)
assert isinstance(plotStyle, TemporalProfile3DPlotStyle)
if isinstance(w, QgsFieldExpressionWidget):
assert value == w.expression()
assert w.isExpressionValid(value) == w.isValidExpression()
if w.isValidExpression():
self.commitData.emit(w)
else:
s = ""
#print(('Delegate commit failed',w.asExpression()))
if isinstance(w, PlotStyleButton):
self.commitData.emit(w)
def setEditorData(self, editor, index):
cname = self.getColumnName(index)
model = self.mTableView.model()
w = None
if index.isValid() and isinstance(model, PlotSettingsModel3D):
cname = self.getColumnName(index)
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
style = model.idx2plotStyle(index)
if cname == model.cnExpression:
lastExpr = index.model().data(index, Qt.DisplayRole)
assert isinstance(editor, QgsFieldExpressionWidget)
editor.setProperty('lastexpr', lastExpr)
editor.setField(lastExpr)
elif cname == model.cnStyle:
assert isinstance(editor, TemporalProfile3DPlotStyleButton)
editor.setPlotStyle(style)
elif cname == model.cnSensor:
assert isinstance(editor, QComboBox)
m = editor.model()
assert isinstance(m, SensorListModel)
sensor = index.data(role=Qt.UserRole)
if isinstance(sensor, SensorInstrument):
idx = m.sensor2idx(sensor)
editor.setCurrentIndex(idx.row())
elif cname == model.cnTemporalProfile:
assert isinstance(editor, QComboBox)
m = editor.model()
assert isinstance(m, TemporalProfileCollectionListModel)
TP = index.data(role=Qt.UserRole)
if isinstance(TP, TemporalProfile):
idx = m.tp2idx(TP)
editor.setCurrentIndex(idx)
else:
raise NotImplementedError()
def setModelData(self, w, model, index):
cname = self.getColumnName(index)
model = self.mTableView.model()
if index.isValid() and isinstance(model, PlotSettingsModel3D):
if cname == model.cnExpression:
assert isinstance(w, QgsFieldExpressionWidget)
expr = w.asExpression()
exprLast = model.data(index, Qt.DisplayRole)
if w.isValidExpression() and expr != exprLast:
model.setData(index, w.asExpression(), Qt.EditRole)
elif cname == model.cnStyle:
assert isinstance(w, TemporalProfile3DPlotStyleButton)
model.setData(index, w.plotStyle(), Qt.EditRole)
elif cname == model.cnSensor:
assert isinstance(w, QComboBox)
sensor = w.itemData(w.currentIndex(), role=Qt.UserRole)
assert isinstance(sensor, SensorInstrument)
model.setData(index, sensor, Qt.EditRole)
elif cname == model.cnTemporalProfile:
assert isinstance(w, QComboBox)
TP = w.itemData(w.currentIndex(), role=Qt.UserRole)
#assert isinstance(TP, TemporalProfile)
model.setData(index, TP, Qt.EditRole)
else:
raise NotImplementedError()
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
class SensorPixelDataMemoryLayer(QgsVectorLayer):
def __init__(self, sensor, crs=None):
assert isinstance(sensor, SensorInstrument)
if crs is None:
crs = QgsCoordinateReferenceSystem('EPSG:4862')
uri = 'Point?crs={}'.format(crs.authid())
super(SensorPixelDataMemoryLayer, self).__init__(uri, 'Pixels_sensor_' + sensor.name(), 'memory', False)
self.mSensor = sensor
#initialize fields
assert self.startEditing()
# standard field names, types, etc.
fieldDefs = [('pxid', QVariant.String, 'integer'),
('date', QVariant.String, 'char'),
('doy', QVariant.Int, 'integer'),
('geo_x', QVariant.Double, 'decimal'),
('geo_y', QVariant.Double, 'decimal'),
('px_x', QVariant.Int, 'integer'),
('px_y', QVariant.Int, 'integer'),
]
# one field for each band
for b in range(sensor.nb):
fName = 'b{}'.format(b + 1)
fieldDefs.append((fName, QVariant.Double, 'decimal'))
# initialize fields
for fieldDef in fieldDefs:
field = QgsField(fieldDef[0], fieldDef[1], fieldDef[2])
self.addAttribute(field)
self.commitChanges()
def sensor(self):
return self.mSensor
def nPixels(self):
raise NotImplementedError()
def dates(self):
raise NotImplementedError()
class PlotSettingsModel3D(QAbstractTableModel):
#sigSensorAdded = pyqtSignal(SensorPlotSettings)
sigVisibilityChanged = pyqtSignal(TemporalProfile2DPlotStyle)
sigPlotStylesAdded = pyqtSignal(list)
sigPlotStylesRemoved = pyqtSignal(list)
def __init__(self, parent=None, *args):
#assert isinstance(tableView, QTableView)
super(PlotSettingsModel3D, self).__init__(parent=parent)
self.mTimeSeries = None
self.cnID = 'ID'
self.cnExpression = LABEL_EXPRESSION_3D
self.cnTemporalProfile = 'Coordinate'

benjamin.jakimow@geo.hu-berlin.de
committed
self.cnStyle = 'Style'
self.columnNames = [self.cnTemporalProfile, self.cnSensor, self.cnStyle, self.cnExpression]
self.mPlotSettings = []
#assert isinstance(plotWidget, DateTimePlotWidget)
self.sortColumnIndex = 0
self.sortOrder = Qt.AscendingOrder
self.sort(0, Qt.AscendingOrder)
def hasStyleForSensor(self, sensor):
assert isinstance(sensor, SensorInstrument)
for plotStyle in self.mPlotSettings:
assert isinstance(plotStyle, TemporalProfile3DPlotStyle)
if plotStyle.sensor() == sensor:
return True
return False
def createStyle(self, sensor):
if not self.hasStyleForSensor(sensor):
s = TemporalProfile3DPlotStyle()
#use another color for the new sensor
if len(self) > 0:
color = self[-1].color()
s.setColor(nextColor(color))
self.insertPlotStyles([s])
def onSensorRemoved(self, sensor):
assert isinstance(sensor, SensorInstrument)
self.removePlotStyles([s for s in self.mPlotSettings if s.sensor() == sensor])
def __len__(self):
return len(self.mPlotSettings)
def __iter__(self):
return iter(self.mPlotSettings)
def __getitem__(self, slice):
return self.mPlotSettings[slice]
def __contains__(self, item):
return item in self.mPlotSettings
def columnIndex(self, name):
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
def insertPlotStyles(self, plotStyles, i=None):
"""
Inserts PlotStyle
:param plotStyles: TemporalProfilePlotStyle | [list-of-TemporalProfilePlotStyle]
:param i: index to insert, defaults to the last list position
"""
if isinstance(plotStyles, TemporalProfile3DPlotStyle):
plotStyles = [plotStyles]
assert isinstance(plotStyles, list)
for plotStyle in plotStyles:
assert isinstance(plotStyle, TemporalProfile3DPlotStyle)
if i is None:
i = len(self.mPlotSettings)
if len(plotStyles) > 0:
self.beginInsertRows(QModelIndex(), i, i + len(plotStyles)-1)
for j, plotStyle in enumerate(plotStyles):
assert isinstance(plotStyle, TemporalProfile3DPlotStyle)
self.mPlotSettings.insert(i+j, plotStyle)
self.endInsertRows()
self.sigPlotStylesAdded.emit(plotStyles)
def removePlotStyles(self, plotStyles):
"""
Removes PlotStyle instances
:param plotStyles: TemporalProfilePlotStyle | [list-of-TemporalProfilePlotStyle]
"""
if isinstance(plotStyles, TemporalProfile3DPlotStyle):
plotStyles = [plotStyles]
assert isinstance(plotStyles, list)
if len(plotStyles) > 0:
for plotStyle in plotStyles:
assert isinstance(plotStyle, TemporalProfile3DPlotStyle)
if plotStyle in self.mPlotSettings:
idx = self.plotStyle2idx(plotStyle)
self.beginRemoveRows(QModelIndex(), idx.row(),idx.row())
self.mPlotSettings.remove(plotStyle)
self.endRemoveRows()
self.sigPlotStylesRemoved.emit(plotStyles)
def sort(self, col, order):
if self.rowCount() == 0:
return
colName = self.columnames[col]
r = order != Qt.AscendingOrder
#self.beginMoveRows(idxSrc,
if colName == self.cnSensor:
self.mPlotSettings.sort(key = lambda sv:sv.sensor().name(), reverse=r)
def rowCount(self, parent = QModelIndex()):
return len(self.mPlotSettings)
def removeRows(self, row, count , parent = QModelIndex()):
self.beginRemoveRows(parent, row, row + count-1)
toRemove = self.mPlotSettings[row:row + count]
for tsd in toRemove:
self.mPlotSettings.remove(tsd)
self.endRemoveRows()
def plotStyle2idx(self, plotStyle):
assert isinstance(plotStyle, TemporalProfile3DPlotStyle)
if plotStyle in self.mPlotSettings:
i = self.mPlotSettings.index(plotStyle)
return self.createIndex(i, 0)
else:
return QModelIndex()
def idx2plotStyle(self, index):
if index.isValid() and index.row() < self.rowCount():
return self.mPlotSettings[index.row()]
return None
def columnCount(self, parent = QModelIndex()):
def data(self, index, role = Qt.DisplayRole):
if role is None or not index.isValid():
return None
value = None
columnName = self.columnNames[index.column()]
plotStyle = self.idx2plotStyle(index)
if isinstance(plotStyle, TemporalProfile3DPlotStyle):
sensor = plotStyle.sensor()
#print(('data', columnName, role))
if role == Qt.DisplayRole:
if columnName == self.cnSensor:
if isinstance(sensor, SensorInstrument):
value = sensor.name()
else:
value = '<Select Sensor>'
elif columnName == self.cnExpression:
value = plotStyle.expression()
elif columnName == self.cnTemporalProfile:
tp = plotStyle.temporalProfile()
if isinstance(tp, TemporalProfile):
value = tp.name()
else:
value = 'undefined'
elif role == Qt.EditRole:
if columnName == self.cnExpression:
value = plotStyle.expression()
if columnName == self.cnTemporalProfile:
value = Qt.Checked if plotStyle.isVisible() else Qt.Unchecked
elif role == Qt.UserRole:
value = plotStyle
if columnName == self.cnSensor:
value = plotStyle.sensor()
elif columnName == self.cnStyle:
value = plotStyle
else:
value = plotStyle
#print(('get data',value))
return value
def setData(self, index, value, role=None):
if role is None or not index.isValid():
return False
#print(('Set data', index.row(), index.column(), value, role))
columnName = self.columnNames[index.column()]
if value is None:
return False
result = False
plotStyle = self.idx2plotStyle(index)
if isinstance(plotStyle, TemporalProfile3DPlotStyle):
if columnName == self.cnExpression and isinstance(value, str):
plotStyle.setExpression(value)
result = True
elif columnName == self.cnStyle:
if isinstance(value, PlotStyle):
plotStyle.copyFrom(value)
result = True
if columnName == self.cnTemporalProfile:
plotStyle.setVisibility(value == Qt.Checked)
result = True
if role == Qt.EditRole:
if columnName == self.cnSensor:
plotStyle.setSensor(value)
result = True
elif columnName == self.cnExpression:
plotStyle.setExpression(value)
elif columnName == self.cnTemporalProfile:
plotStyle.setTemporalProfile(value)
result = True
elif columnName == self.cnStyle:
plotStyle.copyFrom(value)
result = True
return result
def flags(self, index):
if index.isValid():
columnName = self.columnNames[index.column()]
flags = Qt.ItemIsEnabled | Qt.ItemIsSelectable
if columnName in [self.cnTemporalProfile]:
if columnName in [self.cnTemporalProfile, self.cnSensor, self.cnExpression, self.cnStyle]: #allow check state
flags = flags | Qt.ItemIsEditable
return flags
#return item.qt_flags(index.column())
return Qt.NoItemFlags
def headerData(self, col, orientation, role):
if Qt is None:
return None
if orientation == Qt.Horizontal and role == Qt.DisplayRole:
elif orientation == Qt.Vertical and role == Qt.DisplayRole:
return col
return None
class PlotSettingsModel2D(QAbstractTableModel):
#sigSensorAdded = pyqtSignal(SensorPlotSettings)
sigVisibilityChanged = pyqtSignal(TemporalProfile2DPlotStyle)
sigDataChanged = pyqtSignal(TemporalProfile2DPlotStyle)
sigPlotStylesAdded = pyqtSignal(list)
sigPlotStylesRemoved = pyqtSignal(list)
#assert isinstance(tableView, QTableView)
super(PlotSettingsModel2D, self).__init__(parent=parent)
#assert isinstance(temporalProfileCollection, TemporalProfileCollection)

benjamin.jakimow@geo.hu-berlin.de
committed
self.cnSensor = 'Sensor'
self.cnExpression = LABEL_EXPRESSION_2D

benjamin.jakimow@geo.hu-berlin.de
committed
self.cnStyle = 'Style'
self.columnNames = [self.cnTemporalProfile, self.cnSensor, self.cnStyle, self.cnExpression]
self.mPlotSettings = []
#assert isinstance(plotWidget, DateTimePlotWidget)
self.sortColumnIndex = 0
self.sortOrder = Qt.AscendingOrder
#assert isinstance(self.tpCollection.TS, TimeSeries)
#self.tpCollection.TS.sigSensorAdded.connect(self.addPlotItem)
#self.tpCollection.TS.sigSensorRemoved.connect(self.removeSensor)
self.sort(0, Qt.AscendingOrder)
self.dataChanged.connect(self.signaler)

benjamin.jakimow@geo.hu-berlin.de
committed
def __getitem__(self, slice):
return self.mPlotSettings[slice]
def __contains__(self, item):
return item in self.mPlotSettings
def testSlot(self, *args):
print(('TESTSLOT', args))
def signaler(self, idxUL, idxLR):
if idxUL.isValid():
if cname in [self.cnSensor,self.cnStyle]:
self.sigVisibilityChanged.emit(plotStyle)
if cname in [self.cnExpression]:
self.sigDataChanged.emit(plotStyle)
def requiredBandsIndices(self, sensor):
"""
Returns the band indices required to calculate the values for
the different PlotStyle expressions making use of sensor
:param sensor: SensorInstrument for which the band indices are to be returned.
:return: [list-of-band-indices]
"""
bandIndices = set()
assert isinstance(sensor, SensorInstrument)
for p in [p for p in self.mPlotSettings if p.sensor() == sensor]:
assert isinstance(p, TemporalProfile2DPlotStyle)
expression = p.expression()
#remove leading & tailing "
bandKeys = regBandKey.findall(expression)
for bandIndex in [bandKey2bandIndex(key) for key in bandKeys]:

benjamin.jakimow@geo.hu-berlin.de
committed
def insertPlotStyles(self, plotStyles, i=None):
"""
Inserts PlotStyle
:param plotStyles: TemporalProfilePlotStyle | [list-of-TemporalProfilePlotStyle]
:param i: index to insert, defaults to the last list position
"""
if isinstance(plotStyles, TemporalProfile2DPlotStyle):
plotStyles = [plotStyles]
assert isinstance(plotStyles, list)
for plotStyle in plotStyles:
assert isinstance(plotStyle, TemporalProfile2DPlotStyle)

benjamin.jakimow@geo.hu-berlin.de
committed
if len(plotStyles) > 0:
self.beginInsertRows(QModelIndex(), i, i + len(plotStyles)-1)
for j, plotStyle in enumerate(plotStyles):
assert isinstance(plotStyle, TemporalProfile2DPlotStyle)
self.mPlotSettings.insert(i+j, plotStyle)
self.endInsertRows()
self.sigPlotStylesAdded.emit(plotStyles)
def removePlotStyles(self, plotStyles):
"""
Removes PlotStyle instances
:param plotStyles: TemporalProfilePlotStyle | [list-of-TemporalProfilePlotStyle]
"""
if isinstance(plotStyles, PlotStyle):
plotStyles = [plotStyles]
assert isinstance(plotStyles, list)
if len(plotStyles) > 0:
for plotStyle in plotStyles:
assert isinstance(plotStyle, PlotStyle)
if plotStyle in self.mPlotSettings:
idx = self.plotStyle2idx(plotStyle)
self.beginRemoveRows(QModelIndex(), idx.row(),idx.row())
self.mPlotSettings.remove(plotStyle)
self.endRemoveRows()
self.sigPlotStylesRemoved.emit(plotStyles)
def sort(self, col, order):
if self.rowCount() == 0:
return
colName = self.columnames[col]
r = order != Qt.AscendingOrder
#self.beginMoveRows(idxSrc,
if colName == self.cnSensor:
self.mPlotSettings.sort(key = lambda sv:sv.sensor().name(), reverse=r)
elif colName == self.cnExpression:
self.mPlotSettings.sort(key=lambda sv: sv.expression(), reverse=r)
elif colName == self.cnStyle:
self.mPlotSettings.sort(key=lambda sv: sv.color, reverse=r)
def rowCount(self, parent = QModelIndex()):
return len(self.mPlotSettings)
def removeRows(self, row, count , parent = QModelIndex()):
for tsd in toRemove:
self.endRemoveRows()
assert isinstance(plotStyle, TemporalProfile2DPlotStyle)
if plotStyle in self.mPlotSettings:
i = self.mPlotSettings.index(plotStyle)
return self.createIndex(i, 0)
else:
return QModelIndex()
def idx2plotStyle(self, index):
if index.isValid() and index.row() < self.rowCount():
return self.mPlotSettings[index.row()]
return None
def columnCount(self, parent = QModelIndex()):
def data(self, index, role = Qt.DisplayRole):
if role is None or not index.isValid():
return None
value = None
columnName = self.columnNames[index.column()]
if isinstance(plotStyle, TemporalProfile2DPlotStyle):
sensor = plotStyle.sensor()
#print(('data', columnName, role))
if role == Qt.DisplayRole:
if columnName == self.cnSensor:
if isinstance(sensor, SensorInstrument):
value = sensor.name()
else:
value = '<Select Sensor>'
elif columnName == self.cnExpression:
value = plotStyle.expression()
elif columnName == self.cnTemporalProfile:
tp = plotStyle.temporalProfile()
if isinstance(tp, TemporalProfile):
value = tp.name()
else:
value = 'undefined'
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
#elif role == Qt.DecorationRole:
# if columnName == self.cnStyle:
# value = plotStyle.createIcon(QSize(96,96))
elif role == Qt.CheckStateRole:
if columnName == self.cnTemporalProfile:
value = Qt.Checked if plotStyle.isVisible() else Qt.Unchecked
elif role == Qt.UserRole:
value = plotStyle
if columnName == self.cnSensor:
value = plotStyle.sensor()
elif columnName == self.cnExpression:
value = plotStyle.expression()
elif columnName == self.cnStyle:
value = plotStyle
elif columnName == self.cnTemporalProfile:
value == plotStyle.temporalProfile()
else:
value = plotStyle
#print(('get data',value))
return value
def setData(self, index, value, role=None):
if role is None or not index.isValid():
return False
#print(('Set data', index.row(), index.column(), value, role))
columnName = self.columnNames[index.column()]
result = False
plotStyle = self.idx2plotStyle(index)
if isinstance(plotStyle, TemporalProfile2DPlotStyle):
if role in [Qt.DisplayRole]:
if columnName == self.cnExpression:
plotStyle.setExpression(value)
result = True
elif columnName == self.cnStyle:
if isinstance(value, PlotStyle):
result = True
if role == Qt.CheckStateRole:
if columnName == self.cnTemporalProfile:
plotStyle.setVisibility(value == Qt.Checked)
result = True
if role == Qt.EditRole:
if columnName == self.cnExpression:
plotStyle.setExpression(value)
result = True
elif columnName == self.cnStyle:
plotStyle.copyFrom(value)
result = True
elif columnName == self.cnSensor:
plotStyle.setSensor(value)
result = True
elif columnName == self.cnTemporalProfile:
plotStyle.setTemporalProfile(value)
result = True
if result:
#save plot-style
self.dataChanged.emit(index, index)
return result
def savePlotSettings(self, sensorPlotSettings, index='DEFAULT'):
assert isinstance(sensorPlotSettings, TemporalProfile2DPlotStyle)
id = 'SPS.{}.{}'.format(index, sensorPlotSettings.sensor().id())
d = pickle.dumps(sensorPlotSettings)
SETTINGS.setValue(id, d)
def restorePlotSettings(self, sensor, index='DEFAULT'):
assert isinstance(sensor, SensorInstrument)
id = 'SPS.{}.{}'.format(index, sensor.id())
sensorPlotSettings = SETTINGS.value(id)
if sensorPlotSettings is not None:
try:
sensorPlotSettings = pickle.loads(sensorPlotSettings)
s = ""
except:
sensorPlotSettings = None
pass
if isinstance(sensorPlotSettings, TemporalProfile2DPlotStyle):
return sensorPlotSettings
else:
def flags(self, index):
if index.isValid():
columnName = self.columnNames[index.column()]
flags = Qt.ItemIsEnabled | Qt.ItemIsSelectable
flags = flags | Qt.ItemIsUserCheckable
if columnName in [self.cnTemporalProfile, self.cnSensor, self.cnExpression, self.cnStyle]: #allow check state
flags = flags | Qt.ItemIsEditable
return flags
#return item.qt_flags(index.column())
return Qt.NoItemFlags
def headerData(self, col, orientation, role):
if Qt is None:
return None
if orientation == Qt.Horizontal and role == Qt.DisplayRole:
elif orientation == Qt.Vertical and role == Qt.DisplayRole:
return col
return None
class ProfileViewDockUI(QgsDockWidget, loadUI('profileviewdock.ui')):
def __init__(self, parent=None):
super(ProfileViewDockUI, self).__init__(parent)
self.setupUi(self)
#self.line.setVisible(False)
#self.listWidget.setVisible(False)

benjamin.jakimow@geo.hu-berlin.de
committed
self.baseTitle = self.windowTitle()
self.stackedWidget.currentChanged.connect(self.onStackPageChanged)
self.stackedWidget.setCurrentWidget(self.page2D)

benjamin.jakimow@geo.hu-berlin.de
committed
self.plotWidget3DMPL = None
mode = 'No3D'
if OPENGL_AVAILABLE:
self.init3DWidgets('gl')
elif MATPLOTLIB_AVAILABLE:
self.init3DWidgets('mpl')
#pi = self.plotWidget2D.plotItem
#ax = DateAxis(orientation='bottom', showValues=True)
#pi.layout.addItem(ax, 3,2)

benjamin.jakimow@geo.hu-berlin.de
committed
self.TS = None
self.progressBar.setMinimum(0)
self.progressBar.setMaximum(100)
self.progressBar.setValue(0)
self.progressInfo.setText('')
self.pxViewModel2D = None
self.pxViewModel3D = None
self.tableView2DProfiles.horizontalHeader().setResizeMode(QHeaderView.ResizeToContents)
self.tableView2DProfiles.setSortingEnabled(True)
self.tableViewTemporalProfiles.horizontalHeader().setResizeMode(QHeaderView.ResizeToContents)
self.tableViewTemporalProfiles.setSortingEnabled(True)

benjamin.jakimow@geo.hu-berlin.de
committed
self.menuTPSaveOptions = QMenu()
self.menuTPSaveOptions.addAction(self.actionSaveTPCoordinates)
self.menuTPSaveOptions.addAction(self.actionSaveTPCSV)
self.menuTPSaveOptions.addAction(self.actionSaveTPVector)
self.btnSaveTemporalProfiles.setMenu(self.menuTPSaveOptions)
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
def init3DWidgets(self, mode):
assert mode in ['gl','mpl']
l = self.frame3DPlot.layout()
if True and OPENGL_AVAILABLE and mode == 'gl':
from timeseriesviewer.temporalprofiles3dGL import ViewWidget3D
self.plotWidget3D = ViewWidget3D(parent=self.frame3DPlot)
self.plotWidget3D.setObjectName('plotWidget3D')
size = self.labelDummy3D.size()
l.addWidget(self.plotWidget3D)
self.plotWidget3D.setSizePolicy(self.labelDummy3D.sizePolicy())
self.labelDummy3D.setVisible(False)
l.removeWidget(self.labelDummy3D)
self.plotWidget3D.setBaseSize(size)
self.splitter3D.setSizes([100, 100])
elif MATPLOTLIB_AVAILABLE and mode == 'mpl':
from timeseriesviewer.temporalprofiles3dMPL import MyMplCanvas3D
self.plotWidget3DMPL = MyMplCanvas3D()
self.plotWidget3DMPL.setObjectName('plotWidget3DMPL')
size = self.labelDummy3D.size()
l.addWidget(self.plotWidget3D)
self.plotWidget3D.setSizePolicy(self.labelDummy3D.sizePolicy())
self.labelDummy3D.setVisible(False)
l.removeWidget(self.labelDummy3D)
self.plotWidget3D.setBaseSize(size)
self.splitter3D.setSizes([100, 100])

benjamin.jakimow@geo.hu-berlin.de
committed
def onStackPageChanged(self, i):
w = self.stackedWidget.currentWidget()
title = self.baseTitle
if w == self.page2D:
title = '{} | 2D'.format(title)

benjamin.jakimow@geo.hu-berlin.de
committed
elif w == self.page3D:
title = '{} | 3D'.format(title)

benjamin.jakimow@geo.hu-berlin.de
committed
elif w == self.pagePixel:
title = '{} | Coordinates'.format(title)

benjamin.jakimow@geo.hu-berlin.de
committed
self.setWindowTitle(title)
NEXT_COLOR_HUE_DELTA_CON = 10
NEXT_COLOR_HUE_DELTA_CAT = 100
def nextColor(color, mode='cat'):
"""
Returns another color
:param color: the previous color
:param mode: 'cat' - for categorical color jump (next color looks pretty different to previous)
'con' - for continuous color jump (next color looks similar to previous)
:return:
"""
assert mode in ['cat','con']
assert isinstance(color, QColor)
hue, sat, value, alpha = color.getHsl()
if mode == 'cat':
hue += NEXT_COLOR_HUE_DELTA_CAT
elif mode == 'con':
hue += NEXT_COLOR_HUE_DELTA_CON
if sat == 0:
sat = 255
value = 128
alpha = 255
s = ""
while hue > 360:
hue -= 360
return QColor.fromHsl(hue, sat, value, alpha)
class SpectralTemporalVisualization(QObject):
sigShowPixel = pyqtSignal(TimeSeriesDatum, QgsPoint, QgsCoordinateReferenceSystem)
"""
Signalizes to move to specific date of interest
"""
sigMoveToDate = pyqtSignal(np.datetime64)
def __init__(self, ui):
super(SpectralTemporalVisualization, self).__init__()
assert isinstance(ui, ProfileViewDockUI), 'arg ui of type: {} {}'.format(type(ui), str(ui))
self.ui = ui
import timeseriesviewer.pixelloader
timeseriesviewer.pixelloader.DEBUG = True
self.plot_initialized = False
self.plot2D = ui.plotWidget2D
self.plot2D.getViewBox().sigMoveToDate.connect(self.sigMoveToDate)
self.plot3D = ui.plotWidget3D
# temporal profile collection to store loaded values
self.tpCollection.setMaxProfiles(self.ui.sbMaxTP.value())
self.tpCollection.sigTemporalProfilesAdded.connect(self.onTemporalProfilesAdded)
self.tpCollectionListModel = TemporalProfileCollectionListModel(self.tpCollection)
self.ui.tableViewTemporalProfiles.setModel(self.tpCollection)
self.ui.tableViewTemporalProfiles.selectionModel().selectionChanged.connect(self.onTemporalProfileSelectionChanged)
self.ui.tableViewTemporalProfiles.horizontalHeader().setResizeMode(QHeaderView.ResizeToContents)
self.ui.tableViewTemporalProfiles.contextMenuEvent = self.onTemporalProfilesContextMenu
# pixel loader to load pixel values in parallel
self.pixelLoader = PixelLoader()
self.pixelLoader.sigPixelLoaded.connect(self.onPixelLoaded)
self.pixelLoader.sigLoadingStarted.connect(lambda: self.ui.progressInfo.setText('Start loading...'))
#self.pixelLoader.sigLoadingStarted.connect(self.tpCollection.prune)
self.pixelLoader.sigLoadingFinished.connect(lambda : self.plot2D.enableAutoRange('x', False))
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
#set the plot models for 2D
self.plotSettingsModel2D = PlotSettingsModel2D()
self.ui.tableView2DProfiles.setModel(self.plotSettingsModel2D)
self.ui.tableView2DProfiles.setSortingEnabled(False)
self.ui.tableView2DProfiles.selectionModel().selectionChanged.connect(self.onPlot2DSelectionChanged)
self.ui.tableView2DProfiles.horizontalHeader().setResizeMode(QHeaderView.ResizeToContents)
self.delegateTableView2D = None #wil be set with connecting the TimeSeries
self.plotSettingsModel2D.sigDataChanged.connect(self.requestUpdate)
self.plotSettingsModel2D.rowsInserted.connect(self.onRowsInserted2D)
# set the plot models for 3D
self.plotSettingsModel3D = PlotSettingsModel3D()
self.ui.tableView3DProfiles.setModel(self.plotSettingsModel3D)
self.ui.tableView3DProfiles.setSortingEnabled(False)
self.ui.tableView2DProfiles.selectionModel().selectionChanged.connect(self.onPlot3DSelectionChanged)
self.ui.tableView3DProfiles.horizontalHeader().setResizeMode(QHeaderView.ResizeToContents)
self.plotSettingsModel3D.rowsInserted.connect(self.onRowsInserted3D)
self.delegateTableView3D = None #will be set with connecting the TimeSeries
self.reset3DCamera()
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
def onTemporalProfilesRemoved(removedProfiles):
#set to valid temporal profile
affectedStyles2D = [p for p in self.plotSettingsModel2D if p.temporalProfile() in removedProfiles]
affectedStyles3D = [p for p in self.plotSettingsModel3D if p.temporalProfile() in removedProfiles]
alternativeProfile = self.tpCollection[-1] if len(self.tpCollection) > 0 else None
for s in affectedStyles2D:
assert isinstance(s, TemporalProfile2DPlotStyle)
m = self.plotSettingsModel2D
idx = m.plotStyle2idx(s)
idx = m.createIndex(idx.row(), m.columnNames.index(m.cnTemporalProfile))
m.setData(idx, alternativeProfile, Qt.EditRole)
for s in affectedStyles3D:
assert isinstance(s, TemporalProfile3DPlotStyle)
m = self.plotSettingsModel3D
idx = m.plotStyle2idx(s)
idx = m.createIndex(idx.row(), m.columnNames.index(m.cnTemporalProfile))
m.setData(idx, alternativeProfile, Qt.EditRole)
self.tpCollection.sigTemporalProfilesRemoved.connect(onTemporalProfilesRemoved)
# remove / add plot style
def on2DPlotStyleRemoved(plotStyles):
for plotStyle in plotStyles:
assert isinstance(plotStyle, PlotStyle)
for pi in plotStyle.mPlotItems:
self.plot2D.getPlotItem().removeItem(pi)
def on3DPlotStyleRemoved(plotStyles):
for plotStyle in plotStyles:
assert isinstance(plotStyle, TemporalProfile3DPlotStyle)
for pi in plotStyle.mPlotItems:
self.plot3D.removeItem(pi)
self.plotSettingsModel2D.sigPlotStylesRemoved.connect(on2DPlotStyleRemoved)
self.updateRequested = True
self.updateTimer = QTimer(self)
self.updateTimer.timeout.connect(self.onDataUpdate)
self.updateTimer.start(2000)
self.sigMoveToDate.connect(self.onMoveToDate)

benjamin.jakimow@geo.hu-berlin.de
committed
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
def onTemporalProfilesContextMenu(self, event):
assert isinstance(event, QContextMenuEvent)
tableView = self.ui.tableViewTemporalProfiles
idx = self.ui.tableViewTemporalProfiles.indexAt(event.pos())
model = self.ui.tableViewTemporalProfiles.model()
assert isinstance(model, TemporalProfileCollection)
tp = model.idx2tp(idx)
assert isinstance(tp, TemporalProfile)
menu = QMenu()
a = menu.addAction('Load missing')
a.setToolTip('Loads missing band-pixels.')
a.triggered.connect(lambda : self.loadCoordinate(spatialPoints=tp.coordinate(), mode='all'))
s = ""
a = menu.addAction('Reload')
a.setToolTip('Reloads all band-pixels.')
a.triggered.connect(lambda: self.loadCoordinate(spatialPoints=tp.coordinate(), mode='reload'))
menu.popup(tableView.viewport().mapToGlobal(event.pos()))
self.menu = menu
assert isinstance(TS, TimeSeries)
self.TS = TS
self.tpCollection.connectTimeSeries(self.TS)
self.delegateTableView2D = PlotSettingsModel2DWidgetDelegate(self.ui.tableView2DProfiles, self.TS, self.tpCollectionListModel)
self.delegateTableView2D.setItemDelegates(self.ui.tableView2DProfiles)
self.delegateTableView3D = PlotSettingsModel3DWidgetDelegate(self.ui.tableView3DProfiles, self.TS, self.tpCollectionListModel)
self.delegateTableView3D.setItemDelegates(self.ui.tableView3DProfiles)
def selected2DPlotStyles(self):
result = []
m = self.ui.tableView2DProfiles.model()
for idx in selectedModelIndices(self.ui.tableView2DProfiles):
result.append(m.idx2plotStyle(idx))
return result
def selectedTemporalProfiles(self):
result = []
m = self.ui.tableViewTemporalProfiles.model()
for idx in selectedModelIndices(self.ui.tableViewTemporalProfiles):
result.append(m.idx2tp(idx))
return result
m = self.ui.tableView2DProfiles.model()
m.removePlotStyles(plotStyles)
def removeTemporalProfiles(self, temporalProfiles):
m = self.ui.tableViewTemporalProfiles.model()
if isinstance(m, TemporalProfileCollection):
m.removeTemporalProfiles(temporalProfiles)
def createNewPlotStyle2D(self):
plotStyle.sigExpressionUpdated.connect(self.updatePlot2D)
sensors = list(self.TS.Sensors.keys())
if len(sensors) > 0:
plotStyle.setSensor(sensors[0])
if len(self.tpCollection) > 0:
temporalProfile = self.tpCollection[0]
plotStyle.setTemporalProfile(temporalProfile)
if len(self.plotSettingsModel2D) > 0:
lastStyle = self.plotSettingsModel2D[0] #top style in list is the most-recent
assert isinstance(lastStyle, TemporalProfile2DPlotStyle)
markerColor = nextColor(lastStyle.markerBrush.color())
plotStyle.markerBrush.setColor(markerColor)
self.plotSettingsModel2D.insertPlotStyles([plotStyle], i=0)
pdi = plotStyle.createPlotItem(self.plot2D)
assert isinstance(pdi, TemporalProfilePlotDataItem)
pdi.sigClicked.connect(self.onProfileClicked2D)
pdi.sigPointsClicked.connect(self.onPointsClicked2D)
self.plot2D.getPlotItem().addItem(pdi)
#self.plot2D.getPlotItem().addItem(pg.PlotDataItem(x=[1, 2, 3], y=[1, 2, 3]))
#plotItem.addDataItem(pdi)
#plotItem.plot().sigPlotChanged.emit(plotItem)
self.updatePlot2D()
def createNewPlotStyle3D(self):
if not OPENGL_AVAILABLE:
return
plotStyle = TemporalProfile3DPlotStyle()
plotStyle.sigExpressionUpdated.connect(self.updatePlot3D)
if len(self.tpCollection) > 0:
temporalProfile = self.tpCollection[0]
plotStyle.setTemporalProfile(temporalProfile)
sensors = list(self.TS.Sensors.keys())
if len(sensors) > 0:
plotStyle.setSensor(sensors[0])
self.plotSettingsModel3D.insertPlotStyles([plotStyle], i=0) # latest to the top

benjamin.jakimow@geo.hu-berlin.de
committed
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
def onProfileClicked2D(self, pdi):
if isinstance(pdi, TemporalProfilePlotDataItem):
sensor = pdi.mPlotStyle.sensor()
tp = pdi.mPlotStyle.temporalProfile()
if isinstance(tp, TemporalProfile) and isinstance(sensor, SensorInstrument):
info = ['Sensor:{}'.format(sensor.name()),
'Coordinate:{}, {}'.format(tp.mCoordinate.x(), tp.mCoordinate.y())]
self.ui.tbInfo2D.setPlainText('\n'.join(info))
def onPointsClicked2D(self, pdi, spottedItems):
if isinstance(pdi, TemporalProfilePlotDataItem) and isinstance(spottedItems, list):
sensor = pdi.mPlotStyle.sensor()
tp = pdi.mPlotStyle.temporalProfile()
if isinstance(tp, TemporalProfile) and isinstance(sensor, SensorInstrument):
info = ['Sensor: {}'.format(sensor.name()),
'Coordinate: {}, {}'.format(tp.mCoordinate.x(), tp.mCoordinate.y())]
for item in spottedItems:
pos = item.pos()
x = pos.x()
y = pos.y()
date = num2date(x)
info.append('Date: {}\nValue: {}'.format(date, y))
self.ui.tbInfo2D.setPlainText('\n'.join(info))
def onTemporalProfilesAdded(self, profiles):
self.tpCollection.prune()
for plotStyle in self.plotSettingsModel3D:
assert isinstance(plotStyle, TemporalProfilePlotStyleBase)
if not isinstance(plotStyle.temporalProfile(), TemporalProfile):
r = self.plotSettingsModel3D.plotStyle2idx(plotStyle).row()
c = self.plotSettingsModel3D.columnIndex(self.plotSettingsModel3D.cnTemporalProfile)
idx = self.plotSettingsModel3D.createIndex(r,c)
self.plotSettingsModel3D.setData(idx, self.tpCollection[0])
def onTemporalProfileSelectionChanged(self, selected, deselected):

benjamin.jakimow@geo.hu-berlin.de
committed
nSelected = len(selected)
self.ui.actionRemoveTemporalProfile.setEnabled(nSelected > 0)
self.ui.btnSaveTemporalProfiles.setEnabled(nSelected > 0)
def onPlot2DSelectionChanged(self, selected, deselected):
self.ui.actionRemoveStyle2D.setEnabled(len(selected) > 0)
def onPlot3DSelectionChanged(self, selected, deselected):
self.ui.actionRemoveStyle3D.setEnabled(len(selected) > 0)
self.ui.actionRemoveStyle2D.setEnabled(False)
self.ui.actionRemoveTemporalProfile.setEnabled(False)
self.ui.btnAddStyle2D.setDefaultAction(self.ui.actionAddStyle2D)
self.ui.btnRemoveStyle2D.setDefaultAction(self.ui.actionRemoveStyle2D)
self.ui.btnAddStyle3D.setDefaultAction(self.ui.actionAddStyle3D)
self.ui.btnRemoveStyle3D.setDefaultAction(self.ui.actionRemoveStyle3D)
self.ui.actionAddStyle2D.triggered.connect(self.createNewPlotStyle2D)
self.ui.actionAddStyle3D.triggered.connect(self.createNewPlotStyle3D)
self.ui.btnRefresh2D.setDefaultAction(self.ui.actionRefresh2D)
self.ui.btnRefresh3D.setDefaultAction(self.ui.actionRefresh3D)
self.ui.btnRemoveTemporalProfile.setDefaultAction(self.ui.actionRemoveTemporalProfile)
self.ui.btnReset3DCamera.setDefaultAction(self.ui.actionReset3DCamera)
self.ui.actionRefresh2D.triggered.connect(self.updatePlot2D)
self.ui.actionRefresh3D.triggered.connect(self.updatePlot3D)

benjamin.jakimow@geo.hu-berlin.de
committed
self.ui.btnLoadProfile1.setDefaultAction(self.ui.actionLoadProfileRequest)
self.ui.btnLoadProfile2.setDefaultAction(self.ui.actionLoadProfileRequest)
self.ui.btnLoadProfile3.setDefaultAction(self.ui.actionLoadProfileRequest)
self.ui.actionRemoveStyle2D.triggered.connect(lambda:self.removePlotStyles2D(self.selected2DPlotStyles()))
self.ui.actionRemoveTemporalProfile.triggered.connect(lambda :self.removeTemporalProfiles(self.selectedTemporalProfiles()))
self.ui.actionReset3DCamera.triggered.connect(self.reset3DCamera)
self.tpCollection.sigMaxProfilesChanged.connect(self.ui.sbMaxTP.setValue)
self.ui.sbMaxTP.valueChanged.connect(self.tpCollection.setMaxProfiles)

benjamin.jakimow@geo.hu-berlin.de
committed
from timeseriesviewer.temporalprofiles2d import saveTemporalProfiles

benjamin.jakimow@geo.hu-berlin.de
committed
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
DEF_PATH = None
self.ui.actionSaveTPCoordinates.triggered.connect(
lambda: saveTemporalProfiles(self.tpCollection[:],
QFileDialog.getSaveFileName(
self.ui, 'Save Temporal Profile Coordinates',
DEF_PATH, 'ESRI Shapefile (*.shp);;Geopackage (*.gpkg);;Textfile (*.csv *.txt)'
), mode='coordinate'
)
)
self.ui.actionSaveTPCSV.triggered.connect(
lambda: saveTemporalProfiles(self.tpCollection[:],
QFileDialog.getSaveFileName(
self.ui, 'Save Temporal Profiles to Text File.',
DEF_PATH,
'Textfile (*.csv *.txt)'
), mode ='all'
)
)
self.ui.actionSaveTPVector.triggered.connect(
lambda: saveTemporalProfiles(self.tpCollection[:],
QFileDialog.getSaveFileName(
self.ui, 'Save Temporal Profiles to Vector File.',
DEF_PATH,
'ESRI Shapefile (*.shp);;Geopackage (*.gpkg)'
), mode = 'all'
)
)
#todo: self.ui.actionRemoveStyle2D.triggered.connect(self.plotSettingsModel.createPlotStyle)
def reset3DCamera(self, *args):
if OPENGL_AVAILABLE:
self.plot3D.resetCamera()
def onMoveToDate(self, date):
dt = np.asarray([np.abs(tsd.date - date) for tsd in self.TS])
i = np.argmin(dt)
self.sigMoveToTSD.emit(self.TS[i])
def onPixelLoaded(self, nDone, nMax, d):
self.ui.progressBar.setValue(nDone)
self.ui.progressBar.setMaximum(nMax)
t = 'Loaded {} pixel from {}.'.format(len(d.resProfiles), bn)
else:
t = 'Failed loading from {}.'.format(bn)
if d.info and d.info != '':
t += '({})'.format(d.info)
def requestUpdate(self, *args):
self.updateRequested = True
#next time
def onRowsInserted2D(self, parent, start, end):
model = self.ui.tableView2DProfiles.model()
if isinstance(model, PlotSettingsModel2D):
colExpression = model.columnIndex(model.cnExpression)
colStyle = model.columnIndex(model.cnStyle)
while start <= end:
idxExpr = model.createIndex(start, colExpression)
idxStyle = model.createIndex(start, colStyle)
self.ui.tableView2DProfiles.openPersistentEditor(idxExpr)
self.ui.tableView2DProfiles.openPersistentEditor(idxStyle)
start += 1
def onRowsInserted3D(self, parent, start, end):
model = self.ui.tableView3DProfiles.model()
if isinstance(model, PlotSettingsModel3D):
colExpression = model.columnIndex(model.cnExpression)
colStyle = model.columnIndex(model.cnStyle)
while start <= end:
idxStyle = model.createIndex(start, colStyle)
idxExpr = model.createIndex(start, colExpression)
self.ui.tableView3DProfiles.openPersistentEditor(idxStyle)
self.ui.tableView3DProfiles.openPersistentEditor(idxExpr)
def onObservationClicked(self, plotDataItem, points):
for p in points:
tsd = p.data()
LOADING_MODES = ['missing','reload','all']
def loadCoordinate(self, spatialPoints=None, LUT_bandIndices=None, mode='missing'):
"""
:param spatialPoints: [list-of-geometries] to load pixel values from
:param LUT_bandIndices: dictionary {sensor:[indices]} with band indices to be loaded per sensor
:param mode:
:return:
"""
"""
Loads a temporal profile for a single or multiple geometries.
:param spatialPoints: SpatialPoint | [list-of-SpatialPoints]
"""
assert mode in SpectralTemporalVisualization.LOADING_MODES
if not isinstance(self.plotSettingsModel2D, PlotSettingsModel2D):
#if not self.pixelLoader.isReadyToLoad():
# return False
assert isinstance(self.TS, TimeSeries)
#Get or create the TimeSeriesProfiles which will store the loaded values
tasks = []
TPs = []
theGeometries = []
# Define which (new) bands need to be loaded for each sensor
if LUT_bandIndices is None:
LUT_bandIndices = dict()
for sensor in self.TS.Sensors:
LUT_bandIndices[sensor] = list(range(sensor.nb))
else:
LUT_bandIndices[sensor] = self.plotSettingsModel2D.requiredBandsIndices(sensor)
assert isinstance(LUT_bandIndices, dict)
for sensor in self.TS.Sensors:
assert sensor in LUT_bandIndices.keys()
#update new / existing points
if isinstance(spatialPoints, SpatialPoint):
spatialPoints = [spatialPoints]
for spatialPoint in spatialPoints:
assert isinstance(spatialPoint, SpatialPoint)
TP = self.tpCollection.fromSpatialPoint(spatialPoint)
#if not TP exists for this point, create an empty one
self.tpCollection.insertTemporalProfiles(TP, i=0)
if len(self.tpCollection) == 1:
if len(self.plotSettingsModel2D) == 0:
self.createNewPlotStyle2D()
if len(self.plotSettingsModel3D) == 0:
TPs.append(TP)
theGeometries.append(TP.mCoordinate)
TP_ids = [TP.mID for TP in TPs]
#each TSD is a Task
for tsd in self.TS:
#do not load from invisible TSDs
if not tsd.isVisible():
continue
#which bands do we need to load?
requiredIndices = set(LUT_bandIndices[tsd.sensor])
if len(requiredIndices) == 0:
continue
if mode == 'missing':
missingIndices = set()
for TP in TPs:
assert isinstance(TP, TemporalProfile)
need2load = TP.missingBandIndices(tsd, requiredIndices=requiredIndices)
missingIndices = missingIndices.union(need2load)
missingIndices = sorted(list(missingIndices))
else:
missingIndices = requiredIndices
if len(missingIndices) > 0:
task = PixelLoaderTask(tsd.pathImg, theGeometries,
bandIndices=missingIndices,
temporalProfileIDs=TP_ids)
tasks.append(task)
if len(tasks) > 0:
aGoodDefault = 2 if len(self.TS) > 25 else 1
#self.pixelLoader.setNumberOfProcesses(SETTINGS.value('profileloader_threads', aGoodDefault))
if DEBUG:
print('Start loading for {} geometries from {} sources...'.format(
len(theGeometries), len(tasks)
))
self.pixelLoader.startLoading(tasks)
else:
if DEBUG:
print('Data for geometries already loaded')
if sensorView is None:
for sv in self.plotSettingsModel2D.items:
self.setData(sv)
else:
assert isinstance(sensorView, TemporalProfile2DPlotStyle)
self.setData2D(sensorView)
for plotSetting in self.plotSettingsModel2D:
assert isinstance(plotSetting, TemporalProfile2DPlotStyle)
tp = plotSetting.temporalProfile()
for pdi in plotSetting.mPlotItems:
assert isinstance(pdi, TemporalProfilePlotDataItem)
pdi.updateDataAndStyle()
if isinstance(tp, TemporalProfile) and plotSetting.temporalProfile().updated():

benjamin.jakimow@geo.hu-berlin.de
committed
plotSetting.temporalProfile().resetUpdatedFlag()
for i in self.plot2D.getPlotItem().dataItems:
i.updateItems()
notInit = [0, 1] == self.plot2D.getPlotItem().getAxis('bottom').range
if notInit:
for plotSetting in self.plotSettingsModel2D:
assert isinstance(plotSetting, TemporalProfile2DPlotStyle)
for pdi in plotSetting.mPlotItems:
assert isinstance(pdi, TemporalProfilePlotDataItem)
if pdi.xData.ndim == 0 or pdi.xData.shape[0] == 0:
continue
if x0 is None:
x0 = pdi.xData.min()
x1 = pdi.xData.max()
else:
x0 = min(pdi.xData.min(), x0)
x1 = max(pdi.xData.max(), x1)
if x0 is not None:
self.plot2D.getPlotItem().setXRange(x0, x1)
#self.plot2D.xAxisInitialized = True
@QtCore.pyqtSlot()
def updatePlot3D(self):
if OPENGL_AVAILABLE:
from pyqtgraph.opengl import GLViewWidget
from pyqtgraph.opengl.GLGraphicsItem import GLGraphicsItem
import pyqtgraph.opengl as gl
from timeseriesviewer.temporalprofiles3dGL import ViewWidget3D
assert isinstance(self.plot3D, ViewWidget3D)
# 1. ensure that data from all bands will be loaded
# new loaded values will be shown in the next updatePlot3D call
coordinates = []
for plotStyle3D in self.plotSettingsModel3D:
assert isinstance(plotStyle3D, TemporalProfile3DPlotStyle)
if plotStyle3D.isPlotable():
coordinates.append(plotStyle3D.temporalProfile().mCoordinate)
self.loadCoordinate(coordinates, mode='all')
# 2. remove old plot items
# 3. add new plot items
for plotStyle3D in self.plotSettingsModel3D:
assert isinstance(plotStyle3D, TemporalProfile3DPlotStyle)
items = plotStyle3D.createPlotItem(None)
plotItems.extend(items)
self.plot3D.addItems(plotItems)
self.plot3D.updateDataRanges()
self.plot3D.resetScaling()
#self.plot3D.resetCamera()
@QtCore.pyqtSlot()
def updatePlot2D(self):
if isinstance(self.plotSettingsModel2D, PlotSettingsModel2D):
for plotStyle in self.plotSettingsModel2D:
assert isinstance(plotStyle, TemporalProfile2DPlotStyle)
if plotStyle.isPlotable():
locations.add(plotStyle.temporalProfile().mCoordinate)
for pdi in plotStyle.mPlotItems:
assert isinstance(pdi, TemporalProfilePlotDataItem)
pdi.updateDataAndStyle()
#2. load pixel data
self.loadCoordinate(list(locations))
# https://github.com/pyqtgraph/pyqtgraph/blob/5195d9dd6308caee87e043e859e7e553b9887453/examples/customPlot.py
return
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
# prepare QGIS environment
if sys.platform == 'darwin':
PATH_QGS = r'/Applications/QGIS.app/Contents/MacOS'
os.environ['GDAL_DATA'] = r'/usr/local/Cellar/gdal/1.11.3_1/share'
else:
# assume OSGeo4W startup
PATH_QGS = os.environ['QGIS_PREFIX_PATH']
assert os.path.exists(PATH_QGS)
qgsApp = QgsApplication([], True)
QApplication.addLibraryPath(r'/Applications/QGIS.app/Contents/PlugIns')
QApplication.addLibraryPath(r'/Applications/QGIS.app/Contents/PlugIns/qgis')
qgsApp.setPrefixPath(PATH_QGS, True)
qgsApp.initQgis()
gb = QGroupBox()
gb.setTitle('Sandbox')
PL = PixelLoader()
if False:
files = ['observationcloud/testdata/2014-07-26_LC82270652014207LGN00_BOA.bsq',
'observationcloud/testdata/2014-08-03_LE72270652014215CUB00_BOA.bsq'
]
else:
from timeseriesviewer.utils import file_search
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
2037
2038
2039
2040
2041
2042
2043
2044
searchDir = r'H:\LandsatData\Landsat_NovoProgresso'
files = file_search(searchDir, '*227065*band4.img', recursive=True)
#files = files[0:3]
lyr = QgsRasterLayer(files[0])
coord = lyr.extent().center()
crs = lyr.crs()
l = QVBoxLayout()
btnStart = QPushButton()
btnStop = QPushButton()
prog = QProgressBar()
tboxResults = QPlainTextEdit()
tboxResults.setMaximumHeight(300)
tboxThreads = QPlainTextEdit()
tboxThreads.setMaximumHeight(200)
label = QLabel()
label.setText('Progress')
def showProgress(n,m,md):
prog.setMinimum(0)
prog.setMaximum(m)
prog.setValue(n)
info = []
for k, v in md.items():
info.append('{} = {}'.format(k,str(v)))
tboxResults.setPlainText('\n'.join(info))
#tboxThreads.setPlainText(PL.threadInfo())
qgsApp.processEvents()
PL.sigPixelLoaded.connect(showProgress)
btnStart.setText('Start loading')
btnStart.clicked.connect(lambda : PL.startLoading(files, coord, crs))
btnStop.setText('Cancel')
btnStop.clicked.connect(lambda: PL.cancelLoading())
lh = QHBoxLayout()
lh.addWidget(btnStart)
lh.addWidget(btnStop)
l.addLayout(lh)
l.addWidget(prog)
l.addWidget(tboxThreads)
l.addWidget(tboxResults)
gb.setLayout(l)
gb.show()
#rs.setBackgroundStyle('background: qlineargradient(x1:0, y1:0, x2:0, y2:1, stop:0 #222, stop:1 #333);')
#rs.handle.setStyleSheet('background: qlineargradient(x1:0, y1:0, x2:0, y2:1, stop:0 #282, stop:1 #393);')
qgsApp.exec_()
qgsApp.exitQgis()
if __name__ == '__main__':
import site, sys
qgsApp = utils.initQgisApplication(qgisDebug=True)
if False:
f = QgsFeature()
fields = QgsFields()
field = QgsField('b', QVariant.Double, 'double', 40, 5)
fields.append(field)
f.setFields(fields)
expr = QgsExpression('b')
for n in [23, 42.24, None]:
f.setAttribute('b', n)
context = QgsExpressionContextUtils.createFeatureBasedContext(f, f.fields())
r = expr.evaluate(context)
print((n,r))
s = ""
if False: #the ultimative test for floating point division correctness, at least on a DOY-level
date1 = np.datetime64('1960-12-31','D')
assert date1 == num2date(date2num(date1))
#1960 - 12 - 31
for year in range(1960, 2057):
for doy in range(1, daysPerYear(year)+1):
dt = datetime.timedelta(days=doy - 1)
date1 = np.datetime64('{}-01-01'.format(year)) + np.timedelta64(doy-1,'D')
date2 = datetime.date(year=year, month=1, day=1) + datetime.timedelta(days=doy-1)
assert date1 == num2date(date2num(date1), dt64=True), 'date1: {}'.format(date1)
assert date2 == num2date(date2num(date2), dt64=False), 'date2: {}'.format(date1)
STVis = SpectralTemporalVisualization(ui)
STVis.setTimeSeries(TS)
import example.Images
from timeseriesviewer import file_search
files = file_search(os.path.dirname(example.Images.__file__), '*.tif')
for tsd in TS:
ext = tsd.spatialExtent()
if ext.crs().description() != '':
break
cpND = SpatialPoint(ext.crs(), 681151.214,-752388.476)
cp2 = SpatialPoint(ext.crs(), ext.center())
cp3 = SpatialPoint(ext.crs(), ext.center().x()+500, ext.center().y()+250)
STVis.createNewPlotStyle2D()
def addProfile():
x0,y1 = ext.upperLeftPt()
x1,y0 = ext.lowerRightPt()
x = x0 + (x1 - x0) * np.random.sample()
y = y0 + (y1 - y0) * np.random.sample()
pt = SpatialPoint(ext.crs(), x, y)
btn = QPushButton('Add Profile')
btn.clicked.connect(addProfile)
btn.show()
if False:
for tp in STVis.tpCollection:
assert isinstance(tp, TemporalProfile)
tp.plot()
#STVis.tpCollection.removeTemporalProfiles(STVis.tpCollection[-1])
STVis.createNewPlotStyle3D()
STVis.loadCoordinate(cpND)
# STVis.loadCoordinate(cp2)
# STVis.loadCoordinate(cp3)