add several scripts
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- STOMACH_ANALYSIS/Abundance_TMP.m 412 additions, 0 deletionsSTOMACH_ANALYSIS/Abundance_TMP.m
- STOMACH_ANALYSIS/Abundance_all_species.m 248 additions, 0 deletionsSTOMACH_ANALYSIS/Abundance_all_species.m
- STOMACH_ANALYSIS/Abundance_individual_species.m 134 additions, 0 deletionsSTOMACH_ANALYSIS/Abundance_individual_species.m
- STOMACH_ANALYSIS/analysis_kraken.sh 124 additions, 7 deletionsSTOMACH_ANALYSIS/analysis_kraken.sh
- STOMACH_ANALYSIS/blastn_custom.sh 54 additions, 0 deletionsSTOMACH_ANALYSIS/blastn_custom.sh
- STOMACH_ANALYSIS/blastn_custom_db.sh 109 additions, 0 deletionsSTOMACH_ANALYSIS/blastn_custom_db.sh
- STOMACH_ANALYSIS/blastn_nt.sh 53 additions, 0 deletionsSTOMACH_ANALYSIS/blastn_nt.sh
- STOMACH_ANALYSIS/blastn_unassembled_custom.sh 62 additions, 0 deletionsSTOMACH_ANALYSIS/blastn_unassembled_custom.sh
- STOMACH_ANALYSIS/braken_custom_db.sh 70 additions, 0 deletionsSTOMACH_ANALYSIS/braken_custom_db.sh
- STOMACH_ANALYSIS/diet_overlap.m 207 additions, 0 deletionsSTOMACH_ANALYSIS/diet_overlap.m
- STOMACH_ANALYSIS/fasta_files_rename_species.m 62 additions, 0 deletionsSTOMACH_ANALYSIS/fasta_files_rename_species.m
- STOMACH_ANALYSIS/fastaq2fasta.sh 44 additions, 0 deletionsSTOMACH_ANALYSIS/fastaq2fasta.sh
- STOMACH_ANALYSIS/find_class_kraken_report.sh 59 additions, 0 deletionsSTOMACH_ANALYSIS/find_class_kraken_report.sh
- STOMACH_ANALYSIS/kraken2_01.sh 110 additions, 0 deletionsSTOMACH_ANALYSIS/kraken2_01.sh
- STOMACH_ANALYSIS/kraken2_all_against_markerDB.sh 90 additions, 0 deletionsSTOMACH_ANALYSIS/kraken2_all_against_markerDB.sh
- STOMACH_ANALYSIS/kraken2_marker.sh 110 additions, 0 deletionsSTOMACH_ANALYSIS/kraken2_marker.sh
- STOMACH_ANALYSIS/kraken2_marker_combined.sh 88 additions, 0 deletionsSTOMACH_ANALYSIS/kraken2_marker_combined.sh
- STOMACH_ANALYSIS/kraken2_marker_combined_assembly.sh 87 additions, 0 deletionsSTOMACH_ANALYSIS/kraken2_marker_combined_assembly.sh
- STOMACH_ANALYSIS/kraken2_nt.sh 88 additions, 0 deletionsSTOMACH_ANALYSIS/kraken2_nt.sh
- STOMACH_ANALYSIS/kraken2_nt_db.sh 84 additions, 0 deletionsSTOMACH_ANALYSIS/kraken2_nt_db.sh
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